Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1338 ATGGAGAATGACTGCATAGAGGATATGGACATTGAAGTCCTCCCTTCAATGTGGCCTGAGGATATTGGAACTGATGTTGGAAAGCAGTTTAATATAGAAAAGCCTGGGAGAGACCAAGATATGTTGGAGGAGGTTACAATCATAGATGAGCCAACTATAGTTGATTTCAAGCGTCTTATGGAGCTTACAAATTTCACAGAAAAGGGGTCTTCTCAATTGGCATATCTTATGAAACACTGGGAGTATAAGCAGGCCAATGTCGCGCGCCTACTAAGAGAAGAACTTGACAACCTAAGCCAGCAAAGGCAGGATGTTGAGCTTAGGAAATTGGAGATATTGGAAGAGCATCGATTCGAGGAAGAAAGATATGGAGGTGATAAACGCCCGGTTTCTATATTGGATGATATTTATGATGATATATGGCAAGATGTGCCGTCTAGGAAAAGTGATGTTGTGGTTCAAAACAAGAAAATTGAGATTGATGCTGAGTATGATACTGTCATATATTGGAAACAGCGAGCACTTCATTTAGAAAAGCAGCTAGAAGCAAGTGTCCATAGAGAACAAATACTTGAAGAGAAGTTACATGAAAGTATAACAAACATTGAGAGACAGTCCTCGCCTGTGGAAGAACTCTCCCAGATTCTGAAGAGGGCAGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGCTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACTGACGTTGAAATATTCACGGGATCTGGAGTTAGGGAATCTCAAGATTTTAAGAGAGAAGTTTTGGAAAAAGGATTGCCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCAAAGACATTCTTGATATATGTAGAACCTGTCTTTAGTAAGGCAGGGGAAACAATTGGAATAAACTACATGGGAATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCAAAACAAATGCTAGCAACAATGTCTCATGAGATAAGGTCCCCACTATCTGGGGTTGTTAGCATGGCTGAAATTCTTTCCACCACAAGACTTGATCGGGAGCAAAGACAGCTATTGGATGTCATGCTATCTTCTGGAGACTTGGTTCTACAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAACTACCAAATTCCGGCCAAGAGAAGTGGTGAAACATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATATTAACTTTAGAAGGACATGTGGCAGATGGTGTACCTATTGAGGTGAGGACTTGTGTCATTGGTGATGTTTTAAGGATTCGACAAATTCTCACAAATTTAATCAGCAATGCCATCAAGTTTACCCATGAAGGCAAGGTTGGGATTAACCTTTATGTTGTGCCAGAGCCAACTTTTGCAAAAGCAACTGTTTCAGTGGATGAAGTGAAGGAAGAGAACCAAAACCATGCATTCAATGATGAATGTAGATCCCCGGTTAAAAGCGAATGCTCAATGAACGGAGACACTGAGGAGCAACCTCATTCAGCTGAAACAACAGTTTGGATACGTTGTGATGTATATGACACAGGCATTGGAATACCAGAAAATGCTATACCAACTTTATTTAAAAGATACATGCAAGTCAGTGCAGACCATGCTCGAAAATATGGTGGCACAGGGCTTGGACTAGCAATATGCAAACAATTGGTTGAGTTAATGGGGGGTCGCCTAACAGTGTCTAGCAAAGAGCACCATGGTTCTACCTTCACTTTCATACTCCCATGCAAGGTTTCAATCGCTTGTGATAATTCTGATGACCCTGATGAGCTCTCAGATGTGGAGAACAATGATGCTGCATGTGATGGTACAATAGAGGGTTTCTTCCAATTCCAGCCACGTACCTTGGGCTCTCTTTTCTCCTCTAATGGAACCAGCAGGACACAAAAGTTATTACCTCACAAAATTGGCTACTTAAGCTCACATAAACTTAGTGGGTTTTCAGAGAGTTTATACTCATTCCTCTCTAATGATATAATGTCAAAAGGAACATGTTCAGTTGATGATGCATCTTCAGTGATTGATGCTCCACAGATGTCTGAATCGGCTAGTTCATCTGGTCACAGCCCAGAAACAAAGAAGGAAACTTTATTCAGCAGAGTTGAACAGCATCAAGATAAGGCTCATGCTTGGTCCCTGAATGGTAGTGCAGAATCTTCTGAACCTGTGGTAGCAAATACAGCTAGCCAATCCTTTACGAGCAATGGAACATTGGAAGTAACCAAATCCACATTAAATCCTAGGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACACAATCAATGATGAAACAGTTAGGTCATAGCATAGATGTTGTGAATAATGGAGTGGAAGCAGTACGTGCAGTTCAACGCCGCAATTATGACCTGATTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTCGATCTTTCGAGGAAATGGGCACTTGGGATGCTGCAAGAAATGCTGGAATTGAGCAAAGTGCACCAGATCAAGATTATGAATGTTATGTACCATCTCCAAAGCGGATCCCCATTGTCCTGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTGACTTTCCAAAGATTGAAAGAATGTCTCGAACAATATCTTAGGTGA 2877 0.4077 MENDCIEDMDIEVLPSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIDEPTIVDFKRLMELTNFTEKGSSQLAYLMKHWEYKQANVARLLREELDNLSQQRQDVELRKLEILEEHRFEEERYGGDKRPVSILDDIYDDIWQDVPSRKSDVVVQNKKIEIDAEYDTVIYWKQRALHLEKQLEASVHREQILEEKLHESITNIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVRESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTRLDREQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLETTKFRPREVVKHVLQTAAASLQKILTLEGHVADGVPIEVRTCVIGDVLRIRQILTNLISNAIKFTHEGKVGINLYVVPEPTFAKATVSVDEVKEENQNHAFNDECRSPVKSECSMNGDTEEQPHSAETTVWIRCDVYDTGIGIPENAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHHGSTFTFILPCKVSIACDNSDDPDELSDVENNDAACDGTIEGFFQFQPRTLGSLFSSNGTSRTQKLLPHKIGYLSSHKLSGFSESLYSFLSNDIMSKGTCSVDDASSVIDAPQMSESASSSGHSPETKKETLFSRVEQHQDKAHAWSLNGSAESSEPVVANTASQSFTSNGTLEVTKSTLNPRILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQRRNYDLILMDVCMPVMNGLQATKLIRSFEEMGTWDAARNAGIEQSAPDQDYECYVPSPKRIPIVLTANALSESAEECFANGMDSFVSKPVTFQRLKECLEQYLR* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1338 958 Gene3D PAS domain 203 332 - -
Apr5g1338 958 SMART HisKA_10 368 433 IPR003661 GO:0000155|GO:0007165
Apr5g1338 958 Gene3D - 808 958 - -
Apr5g1338 958 SUPERFAMILY CheY-like 814 958 IPR011006 -
Apr5g1338 958 CDD REC_hyHK_CKI1_RcsC-like 816 953 - -
Apr5g1338 958 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 422 643 IPR036890 -
Apr5g1338 958 Pfam Response regulator receiver domain 816 883 IPR001789 GO:0000160
Apr5g1338 958 ProSiteProfiles Response regulatory domain profile. 815 957 IPR001789 GO:0000160
Apr5g1338 958 PRINTS Bacterial sensor protein C-terminal signature 570 584 IPR004358 GO:0016310|GO:0016772
Apr5g1338 958 PRINTS Bacterial sensor protein C-terminal signature 605 623 IPR004358 GO:0016310|GO:0016772
Apr5g1338 958 PRINTS Bacterial sensor protein C-terminal signature 629 642 IPR004358 GO:0016310|GO:0016772
Apr5g1338 958 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 642 IPR003594 -
Apr5g1338 958 CDD HisKA 367 429 IPR003661 GO:0000155|GO:0007165
Apr5g1338 958 Gene3D - 432 648 IPR036890 -
Apr5g1338 958 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 1 533 - -
Apr5g1338 958 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 553 957 - -
Apr5g1338 958 Coils Coil 88 115 - -
Apr5g1338 958 SMART REC_2 814 953 IPR001789 GO:0000160
Apr5g1338 958 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 433 IPR036097 GO:0000155|GO:0007165
Apr5g1338 958 Gene3D - 333 431 - -
Apr5g1338 958 SMART HKATPase_4 483 645 IPR003594 -
Apr5g1338 958 CDD HATPase_EvgS-ArcB-TorS-like 488 643 - -
Apr5g1338 958 ProSiteProfiles Histidine kinase domain profile. 375 645 IPR005467 -
Apr5g1338 958 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 1 533 - -
Apr5g1338 958 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 553 957 - -
Apr5g1338 958 Pfam His Kinase A (phospho-acceptor) domain 370 433 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1338 Apr-Chr5 17625607 17630780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1338 1 957 Histidine Kinase Gene Family AT5G10720 59.504 0.0 1105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr5g1338 HATPase_c 2e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1338 - - gmx:100819520 1604.73