Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1337 ATGTCCCTCTCAGACTTCTATCTCTCTCGTTCTCATTACAAAACCAGGCTCCATTTCACCCTCAGAGACTCCCAAAGTGACGTTCTTACTGCTGCTTCCCAAGCTCTAGACCTCATAAAAAACGAGAAAGTGCAAGCTATCATGGGGCCAACAACAACAATGGAAGCAAACTTTGTGATCAATTTTGGAAACAAAACTCATGTGCCCATTGTAAGCGTTACAGCAACAAGCCCTTCTCTTACTTCACTTCAAAGTCCCTATTTTTTCCAAGTTGCACAAAATGATTCAGCTCAAGTAAAAGCCATTTGTGCAATTGTCCAAGCTTTTGGGTGGAAAGAAGTGGTGCCCATTTACGTAGACAATAGTTATGGTGAAGGGGTCATTCCTTGCTTAACCAATGTTCTTCAACAAGCCTACATCCGAGTTCCCTATCTAAGTGCCATTTCTCTTTCAGCCACAGATAAAGATATCACTGAAGAGCTCTATAACTTGATGGCAATGCAAACTAGAGTCTTTGTTGTGCACATGACACCAAGTCTTGGTTCTCGCCTCTTCACCATAGCAAGGGAGATTGGAATGATGGGACAAGGCTATGTTTGGATTGTAACCAATGGTATGACTAGTTTATTCAGCTCCCTAAACTCCTCAGTCATGGAATCAATGGAAGGTGTATTGGGTGTTAGGCCTTATATTCCAAGAACAAAACAGCTTGATGATTTTAAAGCTAGATGGAAAAGGAAATTTCTACAAGACTATCCAACTCTTTTTGACACAAATTTGAACGTTTTTGGAATATGGGCTTATGATGCTACCACAGCATTAGCAATGGCTGTTGAGAAGGTTGGAGCTGCCAACTTTGATTTTCATGCAAGCAATGCTTCAAGCAACCTTCTTGATCTTGGAAAGGTTGGCGTGGCACAAAATGGTGAGAAGCTGCGTGAAGCTCTCTCAAACACTAGATTCACCGGCCTTAGTGGTGATTTCAATGTGATTGGTGGGCATTTACAAGCATCAATATTTGAGATAATTAATGTGGTTGGTAATGGGGAAAGGAGGGTAGGATTTTGGATGCCACAAAAAGGGCTGCGTAGAAATTTGGATACAAAAGGCTCGAATATATATTCTACTTCTGAAAACAATCTTCGAAACATTATGTGGCCAGGGGATACTTACTTAATCCCAAAGGGATGGGAAATTCCTACAAAGGGGAAGAAGTTGAAAATAGGAGTACCAGTTAAACAAGGAGATGGTTACACTGAATTTGTGAAAATAAACCATGATCCTAAAACCAATGCCACTGAGGTCACTGGCTTTTGTATTGATGTATTTAAAGCTGCGCTAGAAGTGTTGCCTTATACACCCCCATATGAATTTATTCCATTTGCAAAGCCGAATGGTGAGATGGCAGGAACATATGATGATTTGGTCAACCAAGTTTATTATGGGAAATATGATGCTGTGGTGGGGGATGTAACAATTATAGCAAACAGGTCCAACTACGTTGACTTCACATGGCCATACACAGAATCTGGCGTGACAATGGTTGTTCCAGTAAAAGACAATAGGAAGAAGAATGCATGGGCCTTTTTGAAGCCATTGACATGGGATCTTTGGGTAACAACGGCTTGTTCCTTTGTGTTCATTGGATTTGTTGTGTGGGTCCTTGAACACCGAATAAACAGCAGTTTTAGAGGGCCTCCTCCGCATCAGATTAGCACAAGCTTGTGGTTCTCCTTCTCAATCATGGTGTTTGGCCACGGGGAGAAAGTGGTGAGCAACTTGGGCAGATTTGTGGTGATCATATGGGCTTTTGTGGTTCTAATTTTGGTTCAAAGTTACACTGCTAGCCTTACTTCTCTCTTAACCGTTGAACAACTAAGCCCAACTATTAGAGATGTCCATCAACTCATTAAGTATAGGATGAATGTTGGCTATATGAAGGGTTCTTTTGTTCGTGGAATCTTGAAGGAATTGGGTTTCCAAGATTCCCACCTCCAAGTTTATTATTCTCCCGAAGAATGCAATGAGCTTTTCACAAAAGGAATTGAAAATGGTGGCATTGCTGCTGCTTTTGATGAAGTTCCCTACGTGAAGCTATTTCTTGGAACTTACCCTTTCAAATATGCCATGGTTGAACCCAGATTTAGAACTGGGGGATTTGGTTTTGTGTTCCCAAAGGGGTCCCCTCTTGTAGCTGAAATTTCAAGGGCAATCCTATATGTGACTCAAGGAGACAAAATGAACAGAATTGAGAATGCGCAATCTAGTGTAATTTCCTCTAATAATAGTCTTGGCCTTGAAAGCTTCTGGGGTCTATTTCTCCTTGCAGGGATTGCTTCCTTATTAGCACTTCTAATCTTTGCAATCACATTTTTATATCAGCATAAACATGTCTGGTCAAGCCATTATCCAAGTGCTTCAATATGGAAACATATTGGAATCTTGTTAAGGATATTCGACCAAAAAGACTTGGAGAGTCACACGTTCAAGAAAAGTGAAATGGGAAATAGAAGTGAAATGAATAGTCCTCGTCATGGCATTGGTGCAATTGAGACCACCACAAGTTGTCATTGCCCAACAAGTCCTCTTAGTCAAATCGAATCAAACTTTTCCTTTAATGGAGAAAGAGGAATATCATTCCAGACCATGATGATGCTATTAACTATAGTTATGTTGTTCAAGATACAGAAAGGAGGGTCTGTTGGTTCTATTCCTTCAAACACGTTTTTTCCCAGAGGTTCACCTCTAGTAACTGACATTTCTAGGGCAATCCTCAATGTGACACAAGGAGATAAAATCAAAATTATTGAGGATGCATGGTTCAGGAAAAACGATTGTCCACAGACCGATACTTCAATTTCTCCAGATAATCTAGGCCTTGATAGCTTCTGGGGCCTTTTCCTTATAGCATTCGTTGCTTCACACTCATCATGCGGTGCAAAAATTGAGTTCTCCACAAGTACTTATTGCCCATCAAGTCCCTCACCATCTGGTCAAATGGAATCAAAGTTCTCGTTTAATGGAGATCACGGAATGTTTTTTGCATACCATGGTGATGTTAATCCATATGGCCATGAAGCTCATGACATGCAGATAACCATCATGCAAAATGTTCCATCTGCAAGAATTACGACTCCAGAAGTAGCTCCTCCATGCTGA 3159 0.4084 MSLSDFYLSRSHYKTRLHFTLRDSQSDVLTAASQALDLIKNEKVQAIMGPTTTMEANFVINFGNKTHVPIVSVTATSPSLTSLQSPYFFQVAQNDSAQVKAICAIVQAFGWKEVVPIYVDNSYGEGVIPCLTNVLQQAYIRVPYLSAISLSATDKDITEELYNLMAMQTRVFVVHMTPSLGSRLFTIAREIGMMGQGYVWIVTNGMTSLFSSLNSSVMESMEGVLGVRPYIPRTKQLDDFKARWKRKFLQDYPTLFDTNLNVFGIWAYDATTALAMAVEKVGAANFDFHASNASSNLLDLGKVGVAQNGEKLREALSNTRFTGLSGDFNVIGGHLQASIFEIINVVGNGERRVGFWMPQKGLRRNLDTKGSNIYSTSENNLRNIMWPGDTYLIPKGWEIPTKGKKLKIGVPVKQGDGYTEFVKINHDPKTNATEVTGFCIDVFKAALEVLPYTPPYEFIPFAKPNGEMAGTYDDLVNQVYYGKYDAVVGDVTIIANRSNYVDFTWPYTESGVTMVVPVKDNRKKNAWAFLKPLTWDLWVTTACSFVFIGFVVWVLEHRINSSFRGPPPHQISTSLWFSFSIMVFGHGEKVVSNLGRFVVIIWAFVVLILVQSYTASLTSLLTVEQLSPTIRDVHQLIKYRMNVGYMKGSFVRGILKELGFQDSHLQVYYSPEECNELFTKGIENGGIAAAFDEVPYVKLFLGTYPFKYAMVEPRFRTGGFGFVFPKGSPLVAEISRAILYVTQGDKMNRIENAQSSVISSNNSLGLESFWGLFLLAGIASLLALLIFAITFLYQHKHVWSSHYPSASIWKHIGILLRIFDQKDLESHTFKKSEMGNRSEMNSPRHGIGAIETTTSCHCPTSPLSQIESNFSFNGERGISFQTMMMLLTIVMLFKIQKGGSVGSIPSNTFFPRGSPLVTDISRAILNVTQGDKIKIIEDAWFRKNDCPQTDTSISPDNLGLDSFWGLFLIAFVASHSSCGAKIEFSTSTYCPSSPSPSGQMESKFSFNGDHGMFFAYHGDVNPYGHEAHDMQITIMQNVPSARITTPEVAPPC* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1337 1052 Gene3D - 406 525 - -
Apr5g1337 1052 CDD GluR_Plant 404 753 - -
Apr5g1337 1052 SMART GluR_14 407 755 IPR001320 GO:0015276|GO:0016020
Apr5g1337 1052 PANTHER GLUTAMATE RECEPTOR 2.9 1 841 - -
Apr5g1337 1052 PANTHER GLUTAMATE RECEPTOR 2.9 909 977 - -
Apr5g1337 1052 CDD PBP1_GABAb_receptor_plant 1 366 IPR044440 -
Apr5g1337 1052 Pfam Ligand-gated ion channel 753 779 IPR001320 GO:0015276|GO:0016020
Apr5g1337 1052 Pfam Bacterial extracellular solute-binding proteins, family 3 432 752 IPR001638 -
Apr5g1337 1052 Gene3D - 526 657 - -
Apr5g1337 1052 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 909 977 - -
Apr5g1337 1052 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 841 - -
Apr5g1337 1052 SUPERFAMILY Periplasmic binding protein-like I 15 388 IPR028082 -
Apr5g1337 1052 Gene3D - 11 100 - -
Apr5g1337 1052 SUPERFAMILY Periplasmic binding protein-like II 384 752 - -
Apr5g1337 1052 Gene3D - 305 405 - -
Apr5g1337 1052 Pfam Receptor family ligand binding region 3 347 IPR001828 -
Apr5g1337 1052 Gene3D - 101 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1337 Apr-Chr5 17615226 17623368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1337 910 974 Ion Channels AT2G29120 60.606 4.33e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1337 K05387 - rcu:8265217 1057.36