Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1332 ATGGCTTCCAAGCTATGCGACTCTTGCAAATCAGCCACTGCCACTCTCTATTGCCGCCCTGACTCCGCCTTTCTCTGCGCCGCCTGCGACTCCAAAGTCCACGCCGCCAACAAACTCGCTTCTCGTCACCCTCGCGTCTCTCTCTGCGAAGTCTGCGAGCAAGCCCCCGCTCACGTCACCTGCAAAGCCGACGCCGCCGCTCTCTGCCTCGCCTGCGACCGCGACATCCACTCCGCTAACCCCCTCGCCAGCCGCCACGAACGCCTTCCTGTTACGCCGTTCTTTGAGTCCGTACACTCCGTCAAATCGTCCTCGCCGATTAACTTCCTCGACGACCACCGCTTCTTCTCCGACGCGGATGCTGACGTCAGTACCGAAGAAGCTGAGGCTGCTTCCTGGTTGCTCCCTACTCCGAAGACGGATCTGAACTCTTCTCAGTACTTGTTCTCTGAATCCGAACCTGTTCCTTACATAGATCTGGATTATGGTTGCGTCGATCCGAAAGCAGATCAGAAAAGCTCCGCCACCACCGACGGTGTTGTTCCGGTGCAAAGCAACTTCGAGCCTTTCGCCTACGGTTACAAGTACAACACGACTCTGTCGCAGTCGCAGTCGCAGTCGCAGTCACAGATAAGCCATAGTGTATCGTCGTCGTCCATGGAGGTTGGAGTTGTACCGGACGGGAACACTATGTCGGAGATATCGAACTGCAGCTACAGCAAGGTAGCGGCGGTGACAGTGACGGCGCAGTTCTCGGCGGCGGATAGGGAAGCGAGGGTGTTGAGGTACAGGGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACGATTCGCTACGCTTCTAGAAAAGCGTATGCGGAAACCAGGCCAAGGATCAAGGGCAGGTTCGCGAAACGCTCCGACGTCGACCCTCTTGCTGGATACGGCGTCGTTCCGTCGTGTTGA 942 0.5711 MASKLCDSCKSATATLYCRPDSAFLCAACDSKVHAANKLASRHPRVSLCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERLPVTPFFESVHSVKSSSPINFLDDHRFFSDADADVSTEEAEAASWLLPTPKTDLNSSQYLFSESEPVPYIDLDYGCVDPKADQKSSATTDGVVPVQSNFEPFAYGYKYNTTLSQSQSQSQSQISHSVSSSSMEVGVVPDGNTMSEISNCSYSKVAAVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDVDPLAGYGVVPSC* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1332 313 ProSiteProfiles CCT domain profile. 256 298 IPR010402 GO:0005515
Apr5g1332 313 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Apr5g1332 313 SMART bboxneu5 49 91 IPR000315 GO:0008270
Apr5g1332 313 SMART bboxneu5 1 48 IPR000315 GO:0008270
Apr5g1332 313 Pfam CCT motif 256 298 IPR010402 GO:0005515
Apr5g1332 313 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 312 - -
Apr5g1332 313 CDD Bbox1_BBX-like 5 48 - -
Apr5g1332 313 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Apr5g1332 313 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Apr5g1332 313 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Apr5g1332 313 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 312 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1332 Apr-Chr5 17583826 17585108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1332 1 312 C2C2-CO-like Transcription Factor Family AT5G24930 55.937 4.19e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Apr5g1332 zf-B_box 1e-05 No_clan