Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1311 ATGGATGAAAGGCTAAAGGTAAAGGAGGAAATGTTTGAAGCGAAGCTGCAACATGTGAAAGAGGAGAACCGTACTCTTAGACTGATGCTGGAAGCTCTGAACAGCAAATGCGAAAAGCTTCAGTCTCATCTTAAAGAGATCAATAATGCAGCACAAGTGGGTATCATGAAGTCAAACCAAAGTGGAATAGGATCTTACTTGGACACACACTATAGAGCAATACCCGAGTTTTCCCAAGCACAAAAGCTATCACAAATCTTTGTCAGAACCCACCCCGAGGATAATAGTTTGACTGTTAAAGATGGGTATCAGTGGAAGAAGTATGGACAGAAGGTTACCAAAGACAATGCTTCTCCTCGAGCTTATTACAAATGCTCCATGGCTCCCAGTTGCCCCGTCAAAAAAAGGGTGCAAAGAAGCATACTGGATAGGTCTATTCTTGTTGCAACTTACGAAGGAACGCACAACCATGGTGTTTTTGGTGAATTACATCAGCCATCATCCTCTACACCCCAAAGCTCAGTGATGGCTAATAATTTACCCATGACAATCATGCCTAAAAACAAAGATACGATGAACATGGACCTTAATCTTTGTCGTTGGGCTCAAACAGATATAAGACTTTGTGAAGATCATAAGCAGCAACAAAATGCCCGTGGCAACCAAAGTAAAATTGAAGAAAATGTTGGTTCTCTAATCAAGGAACCGGACTTCACCATACCATTAGCTAAAGCAGTTGTTCACTCCATCAAAAATGAGAGTAAGCAACTGGGTCTCAACCTGAATTTGGGTCTTCCAGAATCCCAAGTGTGA 813 0.417 MDERLKVKEEMFEAKLQHVKEENRTLRLMLEALNSKCEKLQSHLKEINNAAQVGIMKSNQSGIGSYLDTHYRAIPEFSQAQKLSQIFVRTHPEDNSLTVKDGYQWKKYGQKVTKDNASPRAYYKCSMAPSCPVKKRVQRSILDRSILVATYEGTHNHGVFGELHQPSSSTPQSSVMANNLPMTIMPKNKDTMNMDLNLCRWAQTDIRLCEDHKQQQNARGNQSKIEENVGSLIKEPDFTIPLAKAVVHSIKNESKQLGLNLNLGLPESQV* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1311 270 Pfam WRKY DNA -binding domain 100 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr5g1311 270 Gene3D WRKY domain 84 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr5g1311 270 SMART WRKY_cls 99 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr5g1311 270 SUPERFAMILY WRKY DNA-binding domain 96 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr5g1311 270 ProSiteProfiles WRKY domain profile. 94 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr5g1311 270 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 3 252 IPR044810 GO:0003700
Apr5g1311 270 Coils Coil 16 50 - -
Apr5g1311 270 PANTHER WRKY TRANSCRIPTION FACTOR 49 3 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1311 Apr-Chr5 17463590 17464907 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1311 54 246 WRKY Transcription Factor Family AT1G80840 40.686 7.00e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr5g1311 WRKY 5.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1311 - - gmx:121175041 322.783