Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1310 ATGGAAACAACATGCGTCGACACTTCTCTCAACCTTAACGTTATTCCTTCTACTCACATGGACGTTGCGGCGGAGGTTATGATCGAAGAGTTGCAGCGTCTAAGTAGTGAGAACAAGTGGTTAACTGAAACGCTGAACCAGATGTGTGAGAACTATCTTGCTTTGCAAAAGCATTTCAATCAATTCAGCCAACTGAGGGACACCAATTTTGAAAAAGAAGCGACACCATCGATGAAAAGAAAGGTCGAGAGTGAGAATTGTGTAAATCTGTTTGGTATTAACGCCTATGCAGAGTGCAGCACTACTACTGAGGAAGAACATTTCAAGAGGCCCAAGCATAACACTTCGCCAAAGGTTTCTAAAGTTTTTGTACGGACGGATGCATCTGATACTAGCTTATATGTGAGGGATGGATATCAGTGGAGAAAATATGGTCAGAAAGTAACCAGAGATAACCCTTCTCCTAGGGCTTACTTCAAGTGCTCGTATGCCCCAAGCTGCCCAGTGAAGAAGAAGGTGCAAAGAAGTGTAGAAGACCCAACTATATTGGTGACAACTTACGAAGGGGAACACAACCATGCACTTCAGCAAGCAGAAATATCAGTGAGTTCAAGCCAAAGTGAAACGTGTTCAGTTTCAGTTCCCTCTTCATCACCCTTACCCTCTCCAATGAATCGGAATACAGGTCCAACCGTAACGCTTGACTTGGTCCAGTCAAAATTGGTTGACATCAATGCTCAAAAGTCATCTATCCAGAAGTTTATAGTTCAACAAATGGCTACTTCTTTGACAAGAGATCCTAATTTTACAGCAGCTCTTGCTAATGCCATCTCAGGAAGAATTCTAGACCATGCTTCTACGGGAAAGCCTTGA 873 0.4296 METTCVDTSLNLNVIPSTHMDVAAEVMIEELQRLSSENKWLTETLNQMCENYLALQKHFNQFSQLRDTNFEKEATPSMKRKVESENCVNLFGINAYAECSTTTEEEHFKRPKHNTSPKVSKVFVRTDASDTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSYAPSCPVKKKVQRSVEDPTILVTTYEGEHNHALQQAEISVSSSQSETCSVSVPSSSPLPSPMNRNTGPTVTLDLVQSKLVDINAQKSSIQKFIVQQMATSLTRDPNFTAALANAISGRILDHASTGKP* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1310 290 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 283 IPR044810 GO:0003700
Apr5g1310 290 SMART WRKY_cls 135 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr5g1310 290 ProSiteProfiles WRKY domain profile. 137 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr5g1310 290 Gene3D WRKY domain 118 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr5g1310 290 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 283 - -
Apr5g1310 290 SUPERFAMILY WRKY DNA-binding domain 132 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr5g1310 290 Pfam WRKY DNA -binding domain 137 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1310 Apr-Chr5 17452720 17454758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1310 3 289 WRKY Transcription Factor Family AT1G80840 44.518 6.11e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr5g1310 WRKY 3.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1310 - - gmx:100127373 407.912