Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1309 ATGGAAGAGTGTCACACGGTGTTTGGGAAGTACGAAATGGGGAGGCTCCTAGGGAAGGGGACGTTTGCCAAAGTGTATTACGGAAAGGAAATAAGCACGGGCGAGAGCGTGGCGATTAAGGTAATAAACAAAGAACAAGTGAAGAAAGAAGGGATGATGGAGCAAATCAAACGCGAGATATCAGTTATGCGTTTGGTGAGACACCCAAACATAGTGGAACTAAAGGAAGTCATGGCCACCAAGACTAAAATCTTCTTCGTAATGGAGTACGTGCGTGGCGGCGAACTCTTCGCCAAAATTTCCAAAGGCAAACTCAAAGAAGATCTCGCCCGTAAATATTTCCACCAACTAATCAGCGCCGTTGATTACTGCCACAGCAGAGGAGTTTCCCACCGCGACCTCAAGCCAGAAAATCTCCTCCTCGACGACAACGAAAACCTCAAAATCTCCGACTTCGGCCTCTCCGCCCTGCCCGAACAGCTTCGCTACGATGGACTCCTCCACACCCAGTGCGGCACCCCTGCTTACGTGGCACCCGAAATTCTCAGAAAAAAAGGCTACGACGGTTCCAAAGCAGATATTTGGTCATGCGGCGTCGTTTTGTACGTTTTGCTCGCTGGCTTTCTTCCTTTTCAAGACGAGAATCTCATGACTATGTATAATAAAGTTCTCAGAGCCGAATTTCAGTTCCCACCGTGGTTTTCATCTGAATCGAGGAGATTGATCTCCAAGATTCTAGTCGCCGACCCGGCCAAACGAACCACGATTCCCGCTATAATGCGCGTGTCATGGTTTCGGAAAGGTTTTTCCGTTACGGACACGTGTCAGTTAGAAGAGAAGGTTACGGAGGACGGCTCTAGAACTGCGACGAGCAAGGTTTCGTCGTCGCCCAAGTTCTTCAACGCGTTTGAGTTCATCTCGTCCATGTCTTCGGGGTTCGATCTATCGGGTCTGTTCGAGAGCAAGAGGAAGACGGGGTCGGTCTTCACGTCGAAGTGTTCGGCGCCGGCGATTGTGTCCAAGATTGAGACGGCGGCGAAGGGGTTGAGTTTCAGGGTGGCGGAGGTGAAGGATTTCAAGATTAAGTTGCAAGGCGCCACGGAGGGAAGGAAGGGGAGGCTGTTGGTGACGGCGGAGGTGTTCGAGGTGGCGCCAGAAGTCGCCGTCGTTGAGTTCTCGAAGTCCGCCGGCGACACCTTGGAATATGCTAAGTTCTGCGAAGAAGACGTGAGACCTGCGCTGAAAGACATTGTGTGGACGTGGCAAGGTGATGCCACGTGTAGCGCTAACGTCCCCGGCTGTCACGGTGACGAGTTTCAAAAGCAAGCGATTACTATTTAA 1341 0.513 MEECHTVFGKYEMGRLLGKGTFAKVYYGKEISTGESVAIKVINKEQVKKEGMMEQIKREISVMRLVRHPNIVELKEVMATKTKIFFVMEYVRGGELFAKISKGKLKEDLARKYFHQLISAVDYCHSRGVSHRDLKPENLLLDDNENLKISDFGLSALPEQLRYDGLLHTQCGTPAYVAPEILRKKGYDGSKADIWSCGVVLYVLLAGFLPFQDENLMTMYNKVLRAEFQFPPWFSSESRRLISKILVADPAKRTTIPAIMRVSWFRKGFSVTDTCQLEEKVTEDGSRTATSKVSSSPKFFNAFEFISSMSSGFDLSGLFESKRKTGSVFTSKCSAPAIVSKIETAAKGLSFRVAEVKDFKIKLQGATEGRKGRLLVTAEVFEVAPEVAVVEFSKSAGDTLEYAKFCEEDVRPALKDIVWTWQGDATCSANVPGCHGDEFQKQAITI* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1309 446 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Apr5g1309 446 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1309 446 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Apr5g1309 446 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 432 - -
Apr5g1309 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Apr5g1309 446 CDD CIPK_C 301 415 - -
Apr5g1309 446 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1309 446 Pfam NAF domain 297 354 IPR004041 GO:0007165
Apr5g1309 446 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1309 446 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Apr5g1309 446 CDD STKc_SnRK3 10 264 - -
Apr5g1309 446 ProSiteProfiles NAF domain profile. 295 320 IPR018451 GO:0007165
Apr5g1309 446 Gene3D Kinase associated domain 1, KA1 294 420 - -
Apr5g1309 446 PANTHER - 1 432 - -
Apr5g1309 446 SUPERFAMILY Protein kinase-like (PK-like) 7 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1309 Apr-Chr5 17436092 17437822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1309 2 430 CBL-interacting serine-threonine protein kinases AT5G10930 71.591 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Apr5g1309 Pkinase 1.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1309 - - gmx:100817520 746.117