Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1305 ATGGCAAAGTGTCACCGGAACGACGTTGGATCAATCGTTCTCGACCACCGTTACTCTGCCAAGAATGCAACTACCGGCGTCCACTTCCGTCTCTGGAATTCCCGCTCCGCCTCCTCGTTCCGTCGCATCATCATCGACGCCGTCAGCTGCAGCGGCACCTCTCGCTACCGTTCTCACCGCCGCAGCCACGACGCCGGCGAGTTAAACTCAACGGCGAGCTCGGCCTCGGGGAGCCAGAGAGAGAAACGGCAAGTGCGGGAGAAGTCGGAGAAACTGTCGGATCTATTGAGCACAACGGAGAGCGAAACGGAGGGGGAGGCGAAGAAGAAAGAAGATGCATTGGTGGAGCTGAAGCGTGTGGTGAAGGAGTTGCGTGAAGATGACTCAACGAAGCGGCAAATGGCTGCGGCAAAAGTGAGGTCACTGGCGAAGGAAGATTCGGAAGCGAGAGGAACACTGGCAACGCTAGGAGCAATTCCTCCACTCGTCGGAATGCTCGATTCTGAAGACGTTCATTCTCAGATCGTTTCGCTCTATGCGTTACTCAACCTGGGAATCGGCAGCGATGCAAACAAAGCAGCAATAGTGAAAATCGGCGCTGTTCACAAGATGCTGAAGCTTATTGAATCGCTGGATGCTACAGATTCGTCGGTATCTGAAGCGATTGTCGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAACAAACCAATAATTGGATCCTCGGGTGCAATACCGTTCCTAGTTAAAACCCTAAAAAAATTAGATTATAATGATGATAATAAAAACAGCTTCCAAGTGAAGCAAGATGCCCTACGAGCATTGTACAACCTTTCACTATTTCAGACCAACGTTTCACTCGTTTTGGAAACCGATTTGGTTTCATTTCTGGTGAACGCCGTAGGGGAGATGGAGGTGAGTGAGAGAGTTCTCTCGATTCTGAGCAATTTGGTGTCGACTCCGGAAGGTAGAAAATGTATCAGTGGTGTGAGGGATGCCATTCCAATTCTAGTGGATGTGTTGAATTGGACAGACTCGCCAGAATGCCAAGAGAAGGCATCGTACATTTTGATGGTTATGGCACATAAAGCCTATGGTGATAGGCAAGCCATGATTGAGGCAGGGATTGGGTCTTCGTTGCTTGAGTTGACCCTTGTGGGTTCCACATTGGCACAGAAAAGGGCCTCAAGGATATTGGAGTGTTTGAGGGTGGACAAAGGGAAGCAGGTTTCTGCAAGTGCAACGGTTTCTGCACCTATTTGTGGTGGCTCTTCATTGGCTTTTATGATGAAGCCAGGTGGAGGAGGTAAAGGGTATTTGGTGGAGGATGAAGATGTGATGATGAGTGAGGAAAAGAGAGCAGTGAAGCAATTAGTCCAGCAGAGTTTGCAGAACAATATGTTGAAAATTGTGAAGAGGGCCAATTTGCGTCAAGATTTCGTTCCATCCCAGCATTTTGCTTCGCTCACGTCAAGTTCGACCTCAAAGAGCTTGCCATTTTGA 1503 0.4904 MAKCHRNDVGSIVLDHRYSAKNATTGVHFRLWNSRSASSFRRIIIDAVSCSGTSRYRSHRRSHDAGELNSTASSASGSQREKRQVREKSEKLSDLLSTTESETEGEAKKKEDALVELKRVVKELREDDSTKRQMAAAKVRSLAKEDSEARGTLATLGAIPPLVGMLDSEDVHSQIVSLYALLNLGIGSDANKAAIVKIGAVHKMLKLIESLDATDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVKTLKKLDYNDDNKNSFQVKQDALRALYNLSLFQTNVSLVLETDLVSFLVNAVGEMEVSERVLSILSNLVSTPEGRKCISGVRDAIPILVDVLNWTDSPECQEKASYILMVMAHKAYGDRQAMIEAGIGSSLLELTLVGSTLAQKRASRILECLRVDKGKQVSASATVSAPICGGSSLAFMMKPGGGGKGYLVEDEDVMMSEEKRAVKQLVQQSLQNNMLKIVKRANLRQDFVPSQHFASLTSSSTSKSLPF* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1305 500 Gene3D - 80 262 IPR011989 -
Apr5g1305 500 SUPERFAMILY ARM repeat 117 403 IPR016024 -
Apr5g1305 500 MobiDBLite consensus disorder prediction 80 109 - -
Apr5g1305 500 Gene3D - 263 422 IPR011989 -
Apr5g1305 500 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 500 - -
Apr5g1305 500 Coils Coil 107 127 - -
Apr5g1305 500 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 500 - -
Apr5g1305 500 SMART arm_5 146 186 IPR000225 GO:0005515
Apr5g1305 500 SMART arm_5 232 280 IPR000225 GO:0005515
Apr5g1305 500 SMART arm_5 188 231 IPR000225 GO:0005515
Apr5g1305 500 SMART arm_5 281 319 IPR000225 GO:0005515
Apr5g1305 500 SMART arm_5 323 362 IPR000225 GO:0005515
Apr5g1305 500 MobiDBLite consensus disorder prediction 55 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1305 Apr-Chr5 17375552 17377214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1305 135 419 U-box Gene Family AT3G46510 34.247 5.17e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1305 - - gmx:100818576 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0214 9 2804344 2807359 Apr5g1305 5 17375552 17377214 PCT