Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1301 ATGACCGTAGAGCATAGAATGGAGGATTCCAGTGACCAGTTTCCCATTGGAATGCGTGTTCTTGCCGTCGACGATGACCCCACTTGCCTCTTGGTTTTGAAAACTCTCCTTCGAAGATGTCAATATCATGCTATGGCCGAGAGTGCAGTAATCACGACTAGTCAAGCAAGAACAGCGTTGGCGCTGTTGAGAGAAAACAAGGACAAGTTTGACCTTGTAATCAGTGACGTGCACATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAGATGGATCTTCCTGTCATAATGTTGTCTGCAAATGGTGATACGAAGCTAGTGATGAAGGGGATTTCTCATGGAGCCTGCGATTATCTGCTGAAACCAGTGAGAATGGAGGAGTTAAAGAATATTTGGCAGCATGTGATTAGGAGAAAGAAGTTTGATTCAAAGGAGAAAAACAAAACCAGCAACCTTGACAAACCTTCTGATAGTGGCAATGGACTAGGGTCAGCAGGAGCAGGAAATTCAGATCAAAATGGAAAGATGACTAAAAAAAGGAAGGATCAGGATGAAGATGAAGATGAGGAGCAGGAGAATGGTCATGACAATGAGGACCCATCTACCCAGAAGAAGGCACGGGTAGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACGAGGGAGAACGTGGCAAGCCATCTCCAGAAATATAGGCTATATTTGAAAAGAATTAGCTGCGTGGCCAACCAACAGGCTAATATGGTGGCGGCCTTAGGGGGTGCAGATTCATCATATTTGAGAATGGGTTCTGTGAGTGGAGTTGGACATTTACAAACATTGAGTGGTTCTGGACAGTTCCATAACAATACTTTCCGATCCCTTCCACCTGGTGGGATAATTAGTAGATTGAACACTCCTGCTGGTTTGAATGTCCATGGATTTCCATCTTCTGGAGTGATTCAGTTGGGTCAATCACAAAATTTGAACAACTCCACCAATGATCATCTTAAGTTCCGGTCAGCCATAGTTTCTGTTAATCAGAATGGTGTTCAGGGAATGCCAGTGTCTGTAGGGCTTGATCAAATGCAAAACAATAAGGGTGTTATGTCTGTTCAAAACCTGACTGCTGTTTTTGATGCCAAAACAACTTTTCCCATCTCAAATAAACTCCCTGATCCACGGCCAAAAATAACCGCCTCTGGCCCTCACACTCCGCATCTCGGTATCTCAAACAATGCTTTGACATTAGAACCACACCCTCAAGGCACACAAGGGGGTATGAGATATGAAAATTCTTCTTCAGTAGCACCTCAACATTCAGAATTTTCTTTGGCTTTGCTGGATCAAGGTAGGTATACTGATAATTGGTCAAATGCGGTGCAGCCATCTGTGATCCAGACAAATACTTACCCTCCAAGTGAAAGTTTTAGACAGACAGATATACCTCCAACAGACAACACGGCTTCTTTGCCCTTGCAAGGGGGGAATCCAAGTGTTCCATCCATCACTTCAATGTCTAGGCAACCCCATGATTCAATGGCAGATATGCACTCTGAAGGAGTGAATTTTACTAATAGACCTGCACATATAAGCAGTAATATGCCATTTCAAGGGTGGGATGACCATAATCAGGGTGCTACTTACCATTCAAATATCATATGTGGATCAATAAACACACTGACTCCAGTTAATGGTGCTGCTGTTCCAGCAGGTCAAACTCCAACAATCTCAACCTTACAGAGAAACTTGGACTTCAATTTTTGTGATCCCTTACAAATGAAGCACGATGAGTTTGTGGAGTCAACTGAAGAGACCTCATTGAAACAACATCGGGGAAATATCATCAACCATCAAAAGTCTCAACAAAATTGCTTCTCTAATACTCTTGGTTCACTGGAAGACTTGGTCAGTTCAATGATGAAGCAGGAGCAAGATAGGATGAAATTATTGAATGGAGACCTCATTTGCGATAATTACTCTGGTGGGGTATCTATGTGA 2067 0.4291 MTVEHRMEDSSDQFPIGMRVLAVDDDPTCLLVLKTLLRRCQYHAMAESAVITTSQARTALALLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPSDSGNGLGSAGAGNSDQNGKMTKKRKDQDEDEDEEQENGHDNEDPSTQKKARVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADSSYLRMGSVSGVGHLQTLSGSGQFHNNTFRSLPPGGIISRLNTPAGLNVHGFPSSGVIQLGQSQNLNNSTNDHLKFRSAIVSVNQNGVQGMPVSVGLDQMQNNKGVMSVQNLTAVFDAKTTFPISNKLPDPRPKITASGPHTPHLGISNNALTLEPHPQGTQGGMRYENSSSVAPQHSEFSLALLDQGRYTDNWSNAVQPSVIQTNTYPPSESFRQTDIPPTDNTASLPLQGGNPSVPSITSMSRQPHDSMADMHSEGVNFTNRPAHISSNMPFQGWDDHNQGATYHSNIICGSINTLTPVNGAAVPAGQTPTISTLQRNLDFNFCDPLQMKHDEFVESTEETSLKQHRGNIINHQKSQQNCFSNTLGSLEDLVSSMMKQEQDRMKLLNGDLICDNYSGGVSM* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1301 688 Gene3D - 205 268 - -
Apr5g1301 688 PIRSF RR_ARR_type-B 1 686 IPR017053 GO:0003677|GO:0003700|GO:0009736
Apr5g1301 688 Pfam Myb-like DNA-binding domain 211 261 IPR001005 -
Apr5g1301 688 CDD REC_typeB_ARR-like 20 140 - -
Apr5g1301 688 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Apr5g1301 688 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 663 IPR045279 GO:0009736
Apr5g1301 688 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Apr5g1301 688 Gene3D - 17 159 - -
Apr5g1301 688 MobiDBLite consensus disorder prediction 157 177 - -
Apr5g1301 688 SUPERFAMILY CheY-like 17 147 IPR011006 -
Apr5g1301 688 MobiDBLite consensus disorder prediction 147 208 - -
Apr5g1301 688 Pfam Response regulator receiver domain 20 134 IPR001789 GO:0000160
Apr5g1301 688 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Apr5g1301 688 MobiDBLite consensus disorder prediction 491 519 - -
Apr5g1301 688 SMART REC_2 18 136 IPR001789 GO:0000160
Apr5g1301 688 ProSiteProfiles Response regulatory domain profile. 19 140 IPR001789 GO:0000160
Apr5g1301 688 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1301 Apr-Chr5 17325762 17330008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1301 1 683 Response Regulator Gene Family AT2G25180 43.553 1.27e-142 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Apr5g1301 Response_reg 1.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1301 - K14491 gmx:100809002 1081.63