Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1300 ATGGAAACACTGAGCCACGAGTCTCCTCTCTCTGCTGAAGAAGCCCCTCCAAGACCAAACACACCATTGCAGGTTCCACATGAAAAGAAACAGCAATCTTTAGAAGAAGAAGTAGAAGAGAAGGAGGCAAAGCTAGATACTTCATTGGATCTAAATGCTCCTGGCGATGATTCTGCTCTTGGGTGCAATCCACTTCTCAATCTCATCACCTCCTTGGACATGGATTTGCCCAACACTTCATCAGAAAATCCCACTGGTTCTGATGTAGAGCCACGAGTGTTCTCTTGCAACTACTGCCAGAGAAAATTCTACAGTTCACAAGCTCTTGGGGGACACCAAAATGCCCACAAGAGGGAGAGGTCAATTGCGAAGAGAAGTCAGAGATCAGGATCCCATATGATAGCTTCAGCAACACCTTCTGGGATTCCCTTTCTTCATAATCAGATTCACCACTATGCTACTATGGCCTCTTTGCCTCTCCACGGTGCTTGTAGTGATAGACCACTTGGAATTCAGGCTCACTCGATGATTCAGAAACCTGCTCCTCATTCTTCTTTCAATGGGTTTCGAAGCACTTATGGAAACCATGGTTGGTCAAGACCCCTTATTGATCAACAACCTGGAATAGGGAAGCTAACAATGGAAACTTATCATAAAACAAGATCTTCATCACGAGGCGGTGTAGGTAAATTCGATGTGGTAAAGAACATGCTCAATTCAGCAGCCAATGAAGAAATCAATGGATATCTGGTTAGTGGAATTACTCGTTTGAAGACTAATCAAGAAGAAAGGAAGCACCTTGACTTGTCCCTAAAGCTCTAA 822 0.4404 METLSHESPLSAEEAPPRPNTPLQVPHEKKQQSLEEEVEEKEAKLDTSLDLNAPGDDSALGCNPLLNLITSLDMDLPNTSSENPTGSDVEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRSQRSGSHMIASATPSGIPFLHNQIHHYATMASLPLHGACSDRPLGIQAHSMIQKPAPHSSFNGFRSTYGNHGWSRPLIDQQPGIGKLTMETYHKTRSSSRGGVGKFDVVKNMLNSAANEEINGYLVSGITRLKTNQEERKHLDLSLKL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1300 273 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Apr5g1300 273 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 273 IPR044246 GO:0009788
Apr5g1300 273 Coils Coil 31 51 - -
Apr5g1300 273 Gene3D Classic Zinc Finger 71 141 - -
Apr5g1300 273 MobiDBLite consensus disorder prediction 29 44 - -
Apr5g1300 273 SUPERFAMILY beta-beta-alpha zinc fingers 91 121 IPR036236 -
Apr5g1300 273 MobiDBLite consensus disorder prediction 1 44 - -
Apr5g1300 273 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 273 - -
Apr5g1300 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1300 Apr-Chr5 17308873 17309694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1300 35 273 C2H2 Transcription Factor Family AT5G10970 41.600 4.93e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr5g1300 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1300 - - gmx:100819663 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0209 9 2703220 2704466 Apr5g1300 5 17308873 17309694 PCT