Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1296 ATGGCCAGACCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTAGACACCCTATATTGAAAACTAGGATATGGCTAGGTACTTTTGAAACTGCTGAGGATGCTGCTAGAGCATACGATGAAGCAGCGAGGTTAATGTGTGGTACAAGAGCAAGAACAAACTTCCCTTACAACCCCAATGCGTCTCAGTCATCATCTTCAAAGCTTCTCTCAGCAACTTTAACTGCTAAACTGCATAGGTGTTACATGGCTTCGTTGCAAATGACAAGGCCATCACTGCCAGAGCCTCAGAGAGTGGATTCACCCAATGTCATCTCCACTAGCAACTTTGCCATGAAAAGCAGCGAAACTGACACAATGTTGCCACAGAAGAGACAACAAGAGGAGCAAGAATCAGAGGGGAATTGGGTTTTCAAGAAGGTTAAGGTGGAAAGTTCTCAGCAGTTCAAGCCTCTTGAAGAAGATCACATAGAGCAAATGATAGAGGAGCTTCTTCATTATGGGTCCATTGAGCTCTATTCTGTCATTCCACCACAGGCTCTTTGA 570 0.4544 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSLPEPQRVDSPNVISTSNFAMKSSETDTMLPQKRQQEEQESEGNWVFKKVKVESSQQFKPLEEDHIEQMIEELLHYGSIELYSVIPPQAL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1296 189 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Apr5g1296 189 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Apr5g1296 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 183 - -
Apr5g1296 189 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Apr5g1296 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 183 - -
Apr5g1296 189 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Apr5g1296 189 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Apr5g1296 189 MobiDBLite consensus disorder prediction 122 142 - -
Apr5g1296 189 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Apr5g1296 189 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Apr5g1296 189 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1296 Apr-Chr5 17257909 17258763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1296 1 189 AP2-EREBP Transcription Factor Family AT5G25190 63.776 1.94e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr5g1296 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1296 - - gmx:100804510 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0205 9 2647517 2648346 Apr5g1296 5 17257909 17258763 PCT