Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1294 ATGAAAGAAGCAACGAAAATGAAGCTTCTTATGCTTCTCATGCTGTTTCTTTTTCTTCACGAACGCATTTGGTTTCATGTCGTTGCAGACCCTCTAGTTCCTTCATCTTCACTCGCTACCCCCACGCCTGCTCTCTCTCCAGGTATTCAGGTACAGGAGGATCTTCACCAAAAAGATTCGCACAAGAAAGTGGTAATAATAGCTCTAGTTGTTGTCGGCAGTGTATTTGGTGCAGTCATTTTGAGTTTGTTATGCTTCTGGATTTATCATACCAAATATTCAAAATTCAATAGGAAGCAAAATGTTCAAAGTTCGGATGCAGAGAAGGGTCTCTCTTTAGTGCCGTTTTGGAGTAAATTAAGTTCCATCAAGGTTGTTGGTATGAAAGGGTCCGTTCCAATAATTGATTATAATCAAATAGAGAAAACGACCAATAATTTTCAGGAAACTAACATCTTGGGTGAGGGTGGTTTCGGACGTGTTTACAAGGCTCGGTTGGACCATAACTTAGATGTCGCGGTCAAGAAAATACACTGTGAAACTCAAAATGCTGTGAGAGAATTTGATAACGAGGTGGATTTGTTAAGTAAAATTCAGCATCCAAATATAATTTCGATACTGGGTTGTAGCATTGATGGCGACACTAAGTTTATTGTGTATGAGTTGATGCAAAATGGATCCTTGGAAGCTCAGTTACATGGACCATCACATGGCTCTGCATTGACTTGGCATATGAGGATGAAGATTGCTCTAGACACAGCAAGAGGATTAGAATATCTACACGAGCATTGTTACCCTGCTGTGATCCATAGAGATATGAAATCTTCTAATATTCTTTTAGATGCAAACTTTAATGCCAAGCTGTCTGATTTTGGTCTTGCCATAACTGATGGGTCCCAAAGCAAGAAGAACATTAAGCTATCAGGTACCTTGGGATACGTAGCACCGGAGTATCTTTTAGATGGTAAAGTGAGTGATAAAAGTGATGTGTATGCTTTTGGGGTTGTGCTGCTGGAACTCTTATTAGGAAGGAAGCCAGTGGAAAAACTGACACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGGTCCAAGCTTCCATACATTGTGGATCCAGTGATAAAGGATACAATGGATCTCAAGCAATTATACCAGGTTGCCGCTGTAGCTGTGTTGTGCGTGCAACCAGAGCCGAGTTATCGCCCACTGATCACAGATGTTCTTCACTCACTTATTCCTCTTGTTCCCATTGAGCTTGGAGGAACACTAAGAGTTTCACAAGCGACACAGCATGATGCCTCTCGTGCTCATCAACCTGTGAATTCCCGTCGTGGATAG 1356 0.4189 MKEATKMKLLMLLMLFLFLHERIWFHVVADPLVPSSSLATPTPALSPGIQVQEDLHQKDSHKKVVIIALVVVGSVFGAVILSLLCFWIYHTKYSKFNRKQNVQSSDAEKGLSLVPFWSKLSSIKVVGMKGSVPIIDYNQIEKTTNNFQETNILGEGGFGRVYKARLDHNLDVAVKKIHCETQNAVREFDNEVDLLSKIQHPNIISILGCSIDGDTKFIVYELMQNGSLEAQLHGPSHGSALTWHMRMKIALDTARGLEYLHEHCYPAVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGTLGYVAPEYLLDGKVSDKSDVYAFGVVLLELLLGRKPVEKLTPAQCQSIVTWAMPQLTDRSKLPYIVDPVIKDTMDLKQLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRVSQATQHDASRAHQPVNSRRG* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1294 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Apr5g1294 451 Pfam Protein tyrosine and serine/threonine kinase 150 366 IPR001245 GO:0004672|GO:0006468
Apr5g1294 451 Gene3D Phosphorylase Kinase; domain 1 116 222 - -
Apr5g1294 451 ProSiteProfiles Protein kinase domain profile. 147 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1294 451 PANTHER OS01G0750732 PROTEIN 30 441 - -
Apr5g1294 451 PANTHER BNAA04G14780D PROTEIN 30 441 - -
Apr5g1294 451 CDD STKc_IRAK 153 420 - -
Apr5g1294 451 SMART serkin_6 147 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1294 451 ProSitePatterns Protein kinases ATP-binding region signature. 153 176 IPR017441 GO:0005524
Apr5g1294 451 SUPERFAMILY Protein kinase-like (PK-like) 126 417 IPR011009 -
Apr5g1294 451 Gene3D Transferase(Phosphotransferase) domain 1 223 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1294 Apr-Chr5 17244855 17248494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1294 29 363 Receptor kinase-like Gene Family AT1G80640 46.746 6.13e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Apr5g1294 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1294 - - gmx:100784795 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0203 9 2611535 2616353 Apr5g1294 5 17244855 17248494 PCT