Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1291 ATGGCGTACCACAATCACCACATGTCCCAAGACCTTCCACTTCCCCATTTCACAGACCAACAACAACACCCCCACCCTGACAACACCTTGCTAGCTACCTCCTCCGACCCTACCTCCAAACCTCCCTCCGATCCTCACCAAACCGCACCCAATTGGCTCAACAACGCCCTTCTTCGCACCCACTTCACTGAAAACAATAACAACCACGCCAACAGCGCCAGTAACAACAACGGCACCAATTTTCTCAACCTTCACACCGCCGCCTCCGACCCCGCCGCCAATCAATCCTCCGGGCAATGGCTTGCCCGGCCGGTCCTCCACCGCAACCGCAGCGAGGTCATCGACGACGTCGCCGGCGCCGGCGAGTCCATGATGGCCGGCGCGACGGTGTCGCACGAATCGGCGGATTTGAAAAGAGGGGTGGAGAAGAGCGAGGCGGTGGCTGCAGAGAGTGGCGGAGAGGGGCTGATGAACTGGCAGAATGCGAGGCACAAGGCGGAGATTCTGGCACATCCTCTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTACGGATCGCCACGCCGGTTGACCAGTTGCCAAGGATCGACGCTCAGCTCGCACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCCTTTGGACAAGGCATCGTTGGAGATGATAAAGAACTCGATCAGTTCTTGTCGCACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAGCATGTCCGGGTCCATGCAATGGAAGCGGTAATGGCTTGTTGGGAGATTGAACAATCCTTACAAAGCCTAACAGGAGTTTCACCCGGGGAGGGTACAGGAGCAACAATGTCTGATGACGAAGAGGACCAAGTGGACAGTGATGCCAATCTGTTTGATGGTGCTTTGGATGGTCCCGATAGCATGGGATTTGGCCCTCTTATTCCCACAGAGAATGAGAGGTCCCTAATGGAACGTGTAAGACATGAATTGAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATCAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGGGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAATGGCCTTACCCTACTGAGGAGGATAAGGCAAGGCTGGTGCAGGAAACGGGTTTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGATGTAATGCAGGTGATAATAGTGGTGATCTTTACATGTAA 1311 0.5217 MAYHNHHMSQDLPLPHFTDQQQHPHPDNTLLATSSDPTSKPPSDPHQTAPNWLNNALLRTHFTENNNNHANSASNNNGTNFLNLHTAASDPAANQSSGQWLARPVLHRNRSEVIDDVAGAGESMMAGATVSHESADLKRGVEKSEAVAAESGGEGLMNWQNARHKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQGIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEEDQVDSDANLFDGALDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRCNAGDNSGDLYM* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1291 436 Pfam KNOX2 domain 219 269 IPR005541 GO:0003677|GO:0005634
Apr5g1291 436 MobiDBLite consensus disorder prediction 14 51 - -
Apr5g1291 436 MobiDBLite consensus disorder prediction 410 436 - -
Apr5g1291 436 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 37 426 - -
Apr5g1291 436 SUPERFAMILY Homeodomain-like 349 412 IPR009057 -
Apr5g1291 436 MobiDBLite consensus disorder prediction 65 84 - -
Apr5g1291 436 SMART ELK_2 327 348 IPR005539 GO:0003677
Apr5g1291 436 CDD homeodomain 350 411 IPR001356 GO:0003677
Apr5g1291 436 Pfam Homeobox KN domain 367 406 IPR008422 GO:0003677|GO:0006355
Apr5g1291 436 Pfam ELK domain 327 348 IPR005539 GO:0003677
Apr5g1291 436 ProSiteProfiles 'Homeobox' domain profile. 347 410 IPR001356 GO:0003677
Apr5g1291 436 MobiDBLite consensus disorder prediction 1 51 - -
Apr5g1291 436 Pfam KNOX1 domain 165 205 IPR005540 GO:0003677|GO:0005634
Apr5g1291 436 SMART HOX_1 349 414 IPR001356 GO:0003677
Apr5g1291 436 ProSiteProfiles ELK domain profile. 327 347 IPR005539 GO:0003677
Apr5g1291 436 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 37 426 - -
Apr5g1291 436 SMART KNOX2_2 215 270 IPR005541 GO:0003677|GO:0005634
Apr5g1291 436 SMART KNOX1_2 162 206 IPR005540 GO:0003677|GO:0005634
Apr5g1291 436 Gene3D - 348 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1291 Apr-Chr5 17194693 17199287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1291 1 424 Homeobox Transcription Factor Family AT5G25220 68.037 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr5g1291 KNOX2 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1291 - - gmx:100790048 692.575