Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1285 ATGGGAAAGCCCACAGGGAAGAAGAAAGAAACCGTTACTCTGAGTGCTGCAAATTCAAATGGTAAGCTCGGGAAGCCTTCGAAAGCTTTCGACGAAGACACGGCAATGTTCCTCAACATGTCACAAGAACTCAAGGAAGAGGGTAACAGGCTCTTTCAGAAGAAGGATCACGAAGGTGCTATGCTTCAGTATGAGAAAGCACTCAAACTCCTTCCGAAGAATCACATAGATGTTGCGCACCTTCGTACCAATATGGCTACGTGTTACATGCAATTGGGTCTTGGGGAATACCCACGAGCCATTAACGAGTGTAATTTGGCGTTGGGAGTGTATCCCACATACAGCAAAGCGCTTTTGAAAAGAGCGAATTGCTATCGTGTGCTTAATCGGATCGATTTGGCACTCAGGGACGTTCGTCTTGTTTTGGGTGTGGAACCTAAGAATCTAACCGCGTTGGAGTTATTTGAGAGTTTGGGAAAGACGACGGAAGAAAAGGGCGTCTCTATTGATGAAAAGGTGGTGGCTTCTGATACCGTACACAATACTGTGGCTCCTACTTTGCAAAATGGGGGGAGAGAGAAAGTGAAGAAAAAGAGAGGGAAAAAGGTTGAGGATAAGGTGGTTGTTGAGGAAAAAGTGAGTGCTGTTAAGGATGAACAAGTGGTTTCCAAAACAATTGAGGAAGAAAAAAGGGTGGTGGAATCTGTGGAGGAAGATAAACCGGCCACAAGGGCAGTGAAGTTAGTGTTTGCAGAGGATATAAGGTGGGCACATTTACCTGTGAAGTGTAGTTTGAAGTTGGTTAGGGATATAGCTAGGGATCGGTTTCCGGGTTTGAAGGGTGTTCTTGTGAAGTATAGGGATCAAGAAGGTGATTTGGTAACAATTACTACTACTGATGAACTAAGGTTGGCTGAATTTTGTTGTCCCAAGTTCGTATCTTTTAGACTTTATATTACTGAGGTTGATCTTGATCAAGAACCTTCTTATGATGGAATAAGCAATGGGGATGAGGTGCGAAGGAGCGGTGGAAAACCAAGTGATGGTGTTGAGAATGGGGGTGTGGAAGAAGGCAGACCTGAAGAGGTAGCGAAGAGGAATGTTACTGTGGAGGATTGGCTTCTCCAGTTTGCGAGGCTGTTCAAGAACCATGTAGGGTTTGAGTCTGATTCTTATCTAGATATTCATGGGCTTGCGATGAAGCTATATGCGGAAGCAATGGAGGATATGGTAACAAGCGATGATGCTCAAGGACTTTTTGAAATTGCTGCAGATAAATTTCAAGAGATGGCAGCTTTGGCACTGCTTAATTGGGGGAGTGTTCAAATGTCCAGGGCAAGGAATCGTGGTTTTTTTTCAGAGGATGGCTCAAGAGCATCATCCTTGGAGCATATTAAAGCTGCATATGAATCAGCGCTAGAGGAGTACAAGAAAGCAGGAATGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTATGAAGGATATCTTGCTCTTGGGCAACAGCAGTTTGAGCAAGCAAGGCTCTGCTGGTGTTATGCAATAGCATGCAAGATGGACTTAGAAACTGGTCCTTCTGATGAGGTTCTGCCACTCTACAACAAGGCAGAGGCGAGCATGGAGAAAGGCATGTCTATGTGGGAGGAGATTGAAGAGCAGCGTTTAAATGGTATATCCAAATCCGATAAACATAAAGCACAGTTAGAGAAATTGGGCTTGGATAGTCTTTACAAAGATATTTCTTATGATGAAGCTTCAAAGCAAGCTGCAAAGATGAGGTCTCAGATATATCTTTTATGGGGTGCCTTGTTATATGAGCGATCTGTTGTGGAATTTAAGCTTCGCCTTCTAACATGGGAGGAATGTTTGGAGGTTGCAGTCGAGAAGTTTGAACTTGCTGGAACCTCTTCAACAGATATTGCTGTCATTATAAAGAATCACTGCTCAAATGAAATGGCCCTTGAAGGTATGGGATGGAAAAATGTCGTGTGGTTCAAAATTGATGAGATAGTACAAGCATGGAATGAAATTTATGATGCTCAGGGGGCGCAGTTTGGTGATCCATCATTTCGACTTGAACAATTGTTTCGTCGGCGTGTTCCTAAACTCCATTACATCATGGAGCAATTTTAA 2136 0.434 MGKPTGKKKETVTLSAANSNGKLGKPSKAFDEDTAMFLNMSQELKEEGNRLFQKKDHEGAMLQYEKALKLLPKNHIDVAHLRTNMATCYMQLGLGEYPRAINECNLALGVYPTYSKALLKRANCYRVLNRIDLALRDVRLVLGVEPKNLTALELFESLGKTTEEKGVSIDEKVVASDTVHNTVAPTLQNGGREKVKKKRGKKVEDKVVVEEKVSAVKDEQVVSKTIEEEKRVVESVEEDKPATRAVKLVFAEDIRWAHLPVKCSLKLVRDIARDRFPGLKGVLVKYRDQEGDLVTITTTDELRLAEFCCPKFVSFRLYITEVDLDQEPSYDGISNGDEVRRSGGKPSDGVENGGVEEGRPEEVAKRNVTVEDWLLQFARLFKNHVGFESDSYLDIHGLAMKLYAEAMEDMVTSDDAQGLFEIAADKFQEMAALALLNWGSVQMSRARNRGFFSEDGSRASSLEHIKAAYESALEEYKKAGMRYEEALKIKPDFYEGYLALGQQQFEQARLCWCYAIACKMDLETGPSDEVLPLYNKAEASMEKGMSMWEEIEEQRLNGISKSDKHKAQLEKLGLDSLYKDISYDEASKQAAKMRSQIYLLWGALLYERSVVEFKLRLLTWEECLEVAVEKFELAGTSSTDIAVIIKNHCSNEMALEGMGWKNVVWFKIDEIVQAWNEIYDAQGAQFGDPSFRLEQLFRRRVPKLHYIMEQF* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1285 711 MobiDBLite consensus disorder prediction 329 362 - -
Apr5g1285 711 Coils Coil 459 479 - -
Apr5g1285 711 PANTHER PROTEIN CLMP1 1 710 IPR044517 -
Apr5g1285 711 SUPERFAMILY CAD & PB1 domains 240 331 - -
Apr5g1285 711 Gene3D Tetratricopeptide repeat domain 33 178 IPR011990 GO:0005515
Apr5g1285 711 Pfam PB1 domain 244 310 IPR000270 GO:0005515
Apr5g1285 711 SMART PB1_new 243 322 IPR000270 GO:0005515
Apr5g1285 711 SUPERFAMILY TPR-like 424 601 IPR011990 GO:0005515
Apr5g1285 711 PANTHER PROTEIN PHOX4 1 710 - -
Apr5g1285 711 SUPERFAMILY TPR-like 41 511 IPR011990 GO:0005515
Apr5g1285 711 MobiDBLite consensus disorder prediction 1 26 - -
Apr5g1285 711 Gene3D - 229 322 - -
Apr5g1285 711 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Apr5g1285 711 SMART tpr_5 460 493 IPR019734 GO:0005515
Apr5g1285 711 SMART tpr_5 41 74 IPR019734 GO:0005515
Apr5g1285 711 SMART tpr_5 79 114 IPR019734 GO:0005515
Apr5g1285 711 SMART tpr_5 115 148 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1285 Apr-Chr5 17158313 17160526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1285 25 148 Calmodulin-binding Proteins AT3G25230 29.323 1.01e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1285 - - aprc:113866000 1364.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0192 9 2456877 2461413 Apr5g1285 5 17158313 17160526 PCT