Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1271 ATGGCACAGGATATTGCTAATCCACCATCACCTTTTGATTTTGAACTCTTGGTTGATGATCCTGAGCACCTTAGAACTGTCACAGCCTCGTTGAGCAACACGGACCCGTGGATTGAACCTGAAAGGTTGAAACTCAGACACAGAATTGGTCGAGGACCCTTTGGTGATGTTTGGTTAGCAACTCATCATCAGTCAACTGAAGATTATGATGAGTATCATGAAGTTGCTGCCAAGATGTTACCTCCAATCAGAGAGGAACATATGAAGACTGTATTGGAGAAATTTCGTGAATTATATTTTCAGTGCCAAGGAGTGGCTGGAGCGTGTTCGTTACTTGGAGCTTCAATTTTAAATGGAAGGATTTGCATCATTATGAATTTTTATGAGGGTTCAGTTGGTGACAAGATGACTAGACTCAGAGAGGGAAGGATTTCGTTGCCTCATGTTCTGAGGTATGGTATTAATCTGGCTAAAGGTATTCTGGAACTTCACTCAAAAGGGGTCCTTGTTCTCAACCTTAAACCATTTAATGTGCTTCTCAACGATAGTGATCAAGCAATACTGGGAGATGTTGGTATTCCCAATCTTCTGTTTGGTTCATCATTCCTAAGCTCAGATATGGCCCACAGGCTTGGTACTCCAAATTACATGGCTCCTGAACAATGGCAACCAGAAGTCAGAGGCCCTATCTCTTTTGAAACAGATTCATGGGGATTCGGGTGCACTATTGTGGAATTGTTGACTGGTAATCAACCTTGGTATGGGCATCCTGTTAGTGACATATACCAGGCGGTTGTTGAAAAATGTGACAAACCCCAGATTCCCAGTGGCCTTCCTTCTTCAATTGAAAATATCCTCAGTGGATGCCTTGAGTATGATTTGAGGAATCGCCCTTCAATGGTGGATATTCTGACCGTCTTTAGAAGCTCACTGGATGCAGTAGCCAACGATGGGGAATGGAGATATCTTGGAACTTGCAAAACGATAGTAAAATCTAGTAGTACTGGCTGCACACAGTGGTTCCTCTCAAAAGATCATCTTCAGGTGGGTGACATAGTGCGATCCAGAAAGCCTTCCAATTCATGCAAACCTCAAAACATGGAGGTCCCAGAAGGAAATGTAGTTGGTTTAGAACGTAATGCAGATCATGGATTTGTTTTAGTTAGGGTCCATGGTGTTCATGACCCTGTAAGGATTCATGCATCTACTCTTGAACGTGTCACTAACGGTTTGGCAGCTGGTGATTGGGTACGCTCGAAGGAAGAAGATGAGAAGCACTCACCAGTGGGTATTCTTCATTCTATCGATCGTGATGGCAGAGTGGCTGTTGGGTTTATTGGTCTGCAAACTCTTTGGAAAGGAAATTCTTCAGAACTTGAAATGGCAGAATCTTACTGTGTTGGCCAATTTATTAGGCTGCAAGCCAACATTTTGAGTCCTCGATTTGAATGGCCCCGTAAAAAGGGAGGTGCCTGGGCTACTGGCAAGATATCTTGGATCCTGCCAAATGGATGTCTAGTTGTTAAGTTCCCAGGGATGTTGACCTTTGGCAATGAACCAAGCACTTTTTTGGCTGATCCCTCCGAGGTTGATGTTGTTAAATTTAGGACTTGTCCAAGGATGATAGAGAAGTATCAACATGTAGAGGATCATCACTGGGCAGTTAGACCTGTTCTAATTGCATTTGGCCTACTTACTGCTGTGAAACTGGGGCTGTTAATTGGTAAGAAAATGGGGAGGAACATGAATGTTAATGCAATGGAGAATGAAACTCATTATACAGATAGCCAGAATGCTAGCAGCCCTACATGGACATCTTCAGTGGCTAACATCCTTTTCAGAGAAGGTGTTAACTTACCCACCGGTCGGTAG 1872 0.4338 MAQDIANPPSPFDFELLVDDPEHLRTVTASLSNTDPWIEPERLKLRHRIGRGPFGDVWLATHHQSTEDYDEYHEVAAKMLPPIREEHMKTVLEKFRELYFQCQGVAGACSLLGASILNGRICIIMNFYEGSVGDKMTRLREGRISLPHVLRYGINLAKGILELHSKGVLVLNLKPFNVLLNDSDQAILGDVGIPNLLFGSSFLSSDMAHRLGTPNYMAPEQWQPEVRGPISFETDSWGFGCTIVELLTGNQPWYGHPVSDIYQAVVEKCDKPQIPSGLPSSIENILSGCLEYDLRNRPSMVDILTVFRSSLDAVANDGEWRYLGTCKTIVKSSSTGCTQWFLSKDHLQVGDIVRSRKPSNSCKPQNMEVPEGNVVGLERNADHGFVLVRVHGVHDPVRIHASTLERVTNGLAAGDWVRSKEEDEKHSPVGILHSIDRDGRVAVGFIGLQTLWKGNSSELEMAESYCVGQFIRLQANILSPRFEWPRKKGGAWATGKISWILPNGCLVVKFPGMLTFGNEPSTFLADPSEVDVVKFRTCPRMIEKYQHVEDHHWAVRPVLIAFGLLTAVKLGLLIGKKMGRNMNVNAMENETHYTDSQNASSPTWTSSVANILFREGVNLPTGR* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1271 623 Pfam Mind bomb SH3 repeat domain 347 459 IPR040847 -
Apr5g1271 623 Gene3D Transferase(Phosphotransferase) domain 1 129 329 - -
Apr5g1271 623 Pfam Protein tyrosine and serine/threonine kinase 43 305 IPR001245 GO:0004672|GO:0006468
Apr5g1271 623 ProSiteProfiles Protein kinase domain profile. 43 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1271 623 PANTHER OS06G0639500 PROTEIN 5 618 - -
Apr5g1271 623 CDD STKc_PknB_like 44 309 - -
Apr5g1271 623 PANTHER OS06G0639500 PROTEIN 5 618 - -
Apr5g1271 623 Gene3D Phosphorylase Kinase; domain 1 18 128 - -
Apr5g1271 623 SUPERFAMILY Protein kinase-like (PK-like) 40 305 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1271 Apr-Chr5 17031817 17038617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1271 34 314 MAP Kinase Kinase Kinase AT2G17700 24.912 1.69e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Apr5g1271 PK_Tyr_Ser-Thr 2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1271 - - gmx:100780636 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0180 9 2324174 2329699 Apr5g1271 5 17031817 17038617 PCT