Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1268 ATGGAGCTTCAGTTAGGCCTGGCCCTCCCCACTCACAACAATCCCATTGAGGGGTTCGACCTTAACAACCCTGGTTTAATAAAGTCAAAACAGATAGTGAGTTTAGACTTATGGAGACCCAGTTGCGGTCCTGAAGGCAAAAATCATGTCAAAAACAAACGCAGCTTTGATGAGTCCTTTGGACATTTTTTGAAACCTTTGCCTTTGCTAGTTTGGAGTGGACAGCCAAACGAGGAAGATGACCGAAGTGAAAAGATGCAAAGAAACATTCACACAACAAACAAGAACAACGAAGAAAATCATTTGGTGGGGTGGCCACCAATTAAATCATGGAGGAGGAAAGAACTCCATCACGAGCAGCCTGCAAGAGGCCAAATCAGGAACGATAGGATGCAAGCTAATGAGAATCGAAGTGTAGGATCGAACTCTTTGTATGTCAAGGTTAACATGGAAGGGGTAGCCATAGGAAGGAAAATCAATTTGAGGCTTTACGACTCTTACCAAACACTAACAAGCACATTGATTAGCATGTTTGCTAAGTACCAAAAATTTGAGGAAGCTGGAGAAAGTTATAAAGTCACCTTTCAAAACGAACAAGGGGATTGGCTGCTAGTTGGACATGTTCCATGGCAGTCCTTCATCGGTACGGTGCGGCGTTTGGTGATGGTGAGGAATGGAAATGAAGCTACTTGA 693 0.4358 MELQLGLALPTHNNPIEGFDLNNPGLIKSKQIVSLDLWRPSCGPEGKNHVKNKRSFDESFGHFLKPLPLLVWSGQPNEEDDRSEKMQRNIHTTNKNNEENHLVGWPPIKSWRRKELHHEQPARGQIRNDRMQANENRSVGSNSLYVKVNMEGVAIGRKINLRLYDSYQTLTSTLISMFAKYQKFEEAGESYKVTFQNEQGDWLLVGHVPWQSFIGTVRRLVMVRNGNEAT* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1268 230 ProSiteProfiles PB1 domain profile. 143 226 IPR000270 GO:0005515
Apr5g1268 230 SUPERFAMILY CAD & PB1 domains 137 220 - -
Apr5g1268 230 Gene3D - 138 230 - -
Apr5g1268 230 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 226 - -
Apr5g1268 230 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 226 IPR003311 GO:0005634|GO:0006355
Apr5g1268 230 Pfam AUX/IAA family 47 225 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1268 Apr-Chr5 17019122 17020566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1268 121 222 B3 DNA Binding Superfamily AT1G59750 29.412 1.35e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Apr5g1268 AUX_IAA 1.7e-35 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1268 K14484 - gmx:100802759 363.614