Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1254 ATGGTACAAGCAAAGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTTTACTTAAGAGAAGAGTGTGGCTAGGCACATTTGAGACAGCGGAGGCAGCAGCAAGGGCATATGATCAAGCAGCCATTTTGATGAATGGTCAGAATGCTAAGACCAATTTCCCTACATCGAAGAACCAAGCTGAAGATTCCACCCATTGCGGTGGTGATGACACTTTCTTGTCTCCCAAGGCTCTTTCTGAGCTTCTCAGCACAAAGCTAAGAAAGTACTGCAAAGACCCTTCTCCATCCCTCACTTGTTTGAGGCTAGATGCTGACAATTCTCACATTGGAGTGTGGCAAAAAGGTGCAGGACCACATTCTGGATCCAACTGGGTCATGAGGGTAGAGCTTGGGAAGAAACACACGGAGGGTGAATCCACAGGGTTGCCACACACTGGTGGTGACATTATTAATGCTGAAAATGCGGTTGAAGAAGAGGAAAGAGTTGCCATGCAGATGATTGAAGAGCTACTTAACTGGAACTACCCTTGTGCTTCAAGTTCATGTGACCAGGAAGAGAAAAGGAACCTTCCATGTCATAGTTCTTAA 615 0.4715 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNQAEDSTHCGGDDTFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGKKHTEGESTGLPHTGGDIINAENAVEEEERVAMQMIEELLNWNYPCASSSCDQEEKRNLPCHSS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1254 204 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Apr5g1254 204 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Apr5g1254 204 Coils Coil 158 178 - -
Apr5g1254 204 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Apr5g1254 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 189 - -
Apr5g1254 204 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Apr5g1254 204 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Apr5g1254 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 189 - -
Apr5g1254 204 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Apr5g1254 204 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Apr5g1254 204 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1254 Apr-Chr5 16920434 16921622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1254 1 189 AP2-EREBP Transcription Factor Family AT5G25390 62.371 7.72e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr5g1254 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1254 - - lang:109326202 301.212