Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1246 ATGAGGTTCTTTTCCTTTGTAATTTTTTCATCCCTATTGCTCAAATTGAGTCTTGGAGACGTTGGTACTGCTACTTCTTATGGACCCCCATACATACCTACTGCTTGCGGTGGAAATATGGCAAGGCAGTTTCCGCCGGGAAATCTTTTTGTGGCTGTGGATGAAGGGTTGTGGGATAACGGTGCAGCCTGTGGAAGGAAATACAGAATAAGGTGTGTTAGTGGAAACAATAAACCATGCAAAGGTGGTAGTATTGATGTTAAAGTGGTTGATTTCTGTGCAAGTTCACCATGTCCCAGCACCCTCCTCATGTCAAGTGATGCCTTTGCAGCCATCTCGCGATTCCCTCGTGCAAAAATTAATATTGAATTTACCCAGTAA 381 0.4357 MRFFSFVIFSSLLLKLSLGDVGTATSYGPPYIPTACGGNMARQFPPGNLFVAVDEGLWDNGAACGRKYRIRCVSGNNKPCKGGSIDVKVVDFCASSPCPSTLLMSSDAFAAISRFPRAKINIEFTQ* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1246 126 PANTHER RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATED 2 126 - -
Apr5g1246 126 Pfam Lytic transglycolase 55 122 IPR009009 -
Apr5g1246 126 Gene3D - 20 126 IPR036908 -
Apr5g1246 126 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 2 126 - -
Apr5g1246 126 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 22 126 IPR007112 -
Apr5g1246 126 SUPERFAMILY Barwin-like endoglucanases 12 125 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1246 Apr-Chr5 16868873 16869691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1246 1 114 Expansin Gene Family AT2G45110 29.104 4.15e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1246 - - gmx:100792215 203.371