Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1231 ATGTCCAGGGACGATGCCAGCCAATACAGCCTCACCGGCATTCCTCTTCCTTCTCTCGGCGCCGCCGCCGCCAACAGCCGGAGACCCAAGCTCCGAGGCTTCATTCTCTCCCCCTATAACCCTCGTTACAGACTGTGGGAAACGTTTCTGGTGTTTCTAGTTTTCTACACTGCATGGGTGTGTCCCTTTGAGTTTGGATTCCTTAACGAACCAGAGGATCCTCTGTCCATTACTGACAATGTTGTGAACGCCCTTTTTGCCATTGACATTGTTCTCACCTTCTTTGTTGCCTACCTTGACAAGGCTACATATTTACTGGTGGACCAGCCGAAGCTCATTGCTTTGCGATATGCAAAAACATGGCTAGCTTTTGATGTCATTTCTACTATCCCTTCTGAATTTGCGCGTAGTGTATTACCCTCTCCTCTTAAGACATATGGCTACTTCAATATACTACGTCTTTGGAGGCTCCGTAGAGTCAGTGCCATGTTTGCAAGATTGGAGAAGCACAGAAATTATAACTACTTCTGGGTGCGCTGTTCAAAGCTTATATGTGTTACTCTATTCGCGTTGCATTTTGCTGCCTGCTTTTACTATTTTCTTGCTGCAAATCATGAAAAAAAATCAACATGGCTCAGCCTTGTTTCTGATGATAGTCAAAAGGATCTTTGGAGTCTCTACGTAACATCAATGTATTGGTCCATAGTGACTCTTTCAACTGTTGGTTATGGTGATTTGCATCCTGTAAATACCAGGGAGATGGTATTTGACATACTCTATATGCTCTTTAACCTGGGACTCACATCATATCTCATTGGAAACATGACAAACTTAGTCGTTCATGGAACAAGCAGAACTAGGAAATATAGAGACACAGTGCAAGCTGCCACAGGTTTTGCTCATAGGAATCAGTTACCTATCCGCTTGCAAGAACAGATGCTTGCTCATTTGTTTATGAAGTACAGAACTGATTTAGAAGGACTGCAGCAACAAGAAATTATTGAATCGCTTCCAAAAGCTATTCGATCTAGCATCTCACACTACCTATTCTATTCACTTGTGGACAAAGTGTACTTGTTTCATGGAGTGTCCTGTGATCTGATTTTTCAACTGGTCACGGAGATGAAGGCTGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAGAATGAAGCCCCAACAGACTTTTATATCTTTGTCACTGGTGCTGCGGAACTACTCATACGAAAGAATGGAATAGAACAGGTCGTTGGTGAGGCACAGTCAGGAGATGTAGTTGGCGAGATAGGGGTTTTATGTTATAGGCCACAGGTGTTTACAGTTCGAACTAAGCGATTGAGCCAAATTCTGCGCTTGAACCGTACTGCATTTCTAAATCTTGCTCATTCAAATGTTGGAGATGGGACAATAATCATGAACAATTTTCTCCAGCATTTGCAAGAATCAAGGCATCCAGGGATGGATTCTGTTTTGGCAGAAACTGAGGCCATGCTGGCTCGGGGTAGAATGGAAATGCCCATTAGCACATGCTTTGCAGCAATCCGAAATGATGATCTATTGTTACATCGTTTGCTTAAAAAGGGTTCAGATCCAAATGAAGTAGATAAGAATGGAAAGACAGCACTGCATATTGCAGCTTCAAAGGGCAATGATCATTGTGTAACTTTGCTTCTAGAATACGGTGCTGATCCCAATATCAAAGATATGGATGGAAGTGTCCCACTGTGGGAAGCAATGGTGGGTAGGCATGAATCTGTGATGAAACTTCTGATAGACAATGGTGCGGACATATCTTCTGCAGATGCAGGCCGTCTGGCATGCAGTGCTGCTGAGGAGAATAACATAGAATTGCTCAAGGAATTAGTTCAATGTGGTATGGATGTGACACAAGCCAGAACGAATGGAACCACTGCTCTGCATGCAGCAGTGACTGAAGGAAACACTGAGATGGTTAAGTTTCTTGTAGAGCAAGGATCAGACATTGATAAGCAAGATGCTAATGGGTGGAGTCCTTGGACTTTGGCAGATCATCAATGCCATGAAGAAATTAAAAATATATTTCAGAACATTAGAGAGAGTAGAAAACCAGTTGCTATTCCAATATCTAATAATGAAAGGATTGGGAGGTTTCAAAGTGATCCTTGTATGCTTACCCTTTCCCAAGATTGCATGCCACTGCCAGCTACTCAAGAAGTGACCTGGCTAGATACTAATCAGAGGAGAAGGTCTTCCAGCTCTTTTCATAATTCCATTTTTGGGATGATCTCTGCTGCCAATCGTGGTAAGTGTATAGAACGTCGGGCATCAGAAAGCAGTAACACTAGTAAAGGGAATGTGAATGGATTCACAAGGGTGATACTTGGTTGTCCTGAAAGAGGTGAAGATGCTAGGAAGCTTGTTTTTCTGCCCAAGTCACTTCAAGAACTGTTAGATATTGGTGCCAGAAAGTTTGATATATCTCCCACCAAAATTTTGACCGAAGACAGAGCTGAAATTGATGATATAAATCTTATAAGAGATGGTGATCATCTTATTATTGCACGGGACTGA 2550 0.4251 MSRDDASQYSLTGIPLPSLGAAAANSRRPKLRGFILSPYNPRYRLWETFLVFLVFYTAWVCPFEFGFLNEPEDPLSITDNVVNALFAIDIVLTFFVAYLDKATYLLVDQPKLIALRYAKTWLAFDVISTIPSEFARSVLPSPLKTYGYFNILRLWRLRRVSAMFARLEKHRNYNYFWVRCSKLICVTLFALHFAACFYYFLAANHEKKSTWLSLVSDDSQKDLWSLYVTSMYWSIVTLSTVGYGDLHPVNTREMVFDILYMLFNLGLTSYLIGNMTNLVVHGTSRTRKYRDTVQAATGFAHRNQLPIRLQEQMLAHLFMKYRTDLEGLQQQEIIESLPKAIRSSISHYLFYSLVDKVYLFHGVSCDLIFQLVTEMKAEYFPPKEDVILQNEAPTDFYIFVTGAAELLIRKNGIEQVVGEAQSGDVVGEIGVLCYRPQVFTVRTKRLSQILRLNRTAFLNLAHSNVGDGTIIMNNFLQHLQESRHPGMDSVLAETEAMLARGRMEMPISTCFAAIRNDDLLLHRLLKKGSDPNEVDKNGKTALHIAASKGNDHCVTLLLEYGADPNIKDMDGSVPLWEAMVGRHESVMKLLIDNGADISSADAGRLACSAAEENNIELLKELVQCGMDVTQARTNGTTALHAAVTEGNTEMVKFLVEQGSDIDKQDANGWSPWTLADHQCHEEIKNIFQNIRESRKPVAIPISNNERIGRFQSDPCMLTLSQDCMPLPATQEVTWLDTNQRRRSSSSFHNSIFGMISAANRGKCIERRASESSNTSKGNVNGFTRVILGCPERGEDARKLVFLPKSLQELLDIGARKFDISPTKILTEDRAEIDDINLIRDGDHLIIARD* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1231 849 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 3 848 - -
Apr5g1231 849 ProSiteProfiles Ankyrin repeat profile. 634 666 IPR002110 GO:0005515
Apr5g1231 849 Pfam KHA, dimerisation domain of potassium ion channel 784 846 IPR021789 -
Apr5g1231 849 ProSiteProfiles Ankyrin repeat region circular profile. 634 665 - -
Apr5g1231 849 ProSiteProfiles Ankyrin repeat profile. 537 569 IPR002110 GO:0005515
Apr5g1231 849 Pfam Ion transport protein 44 286 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Apr5g1231 849 PRINTS Ankyrin repeat signature 538 553 IPR002110 GO:0005515
Apr5g1231 849 PRINTS Ankyrin repeat signature 586 600 IPR002110 GO:0005515
Apr5g1231 849 Pfam Ankyrin repeats (3 copies) 609 682 IPR002110 GO:0005515
Apr5g1231 849 Pfam Ankyrin repeats (3 copies) 512 600 IPR002110 GO:0005515
Apr5g1231 849 Pfam Cyclic nucleotide-binding domain 379 463 IPR000595 -
Apr5g1231 849 ProSiteProfiles KHA domain profile. 784 849 IPR021789 -
Apr5g1231 849 CDD CAP_ED 359 464 IPR000595 -
Apr5g1231 849 Gene3D - 506 689 IPR036770 -
Apr5g1231 849 SUPERFAMILY Voltage-gated potassium channels 38 280 - -
Apr5g1231 849 SMART ANK_2a 634 663 IPR002110 GO:0005515
Apr5g1231 849 SMART ANK_2a 570 599 IPR002110 GO:0005515
Apr5g1231 849 SMART ANK_2a 537 566 IPR002110 GO:0005515
Apr5g1231 849 SMART ANK_2a 600 630 IPR002110 GO:0005515
Apr5g1231 849 SUPERFAMILY cAMP-binding domain-like 284 479 IPR018490 -
Apr5g1231 849 ProSiteProfiles cAMP/cGMP binding motif profile. 359 478 IPR000595 -
Apr5g1231 849 Gene3D Jelly Rolls 325 485 IPR014710 -
Apr5g1231 849 ProSiteProfiles Ankyrin repeat profile. 570 602 IPR002110 GO:0005515
Apr5g1231 849 PANTHER POTASSIUM CHANNEL AKT1 3 848 IPR045319 GO:0005249|GO:0006813
Apr5g1231 849 SUPERFAMILY Ankyrin repeat 510 689 IPR036770 -
Apr5g1231 849 PRINTS EAG/ELK/ERG potassium channel family signature 56 63 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr5g1231 849 PRINTS EAG/ELK/ERG potassium channel family signature 79 89 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr5g1231 849 PRINTS EAG/ELK/ERG potassium channel family signature 90 99 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr5g1231 849 PRINTS EAG/ELK/ERG potassium channel family signature 227 244 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr5g1231 849 PRINTS EAG/ELK/ERG potassium channel family signature 253 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr5g1231 849 PRINTS EAG/ELK/ERG potassium channel family signature 271 280 IPR003938 GO:0005249|GO:0006813|GO:0016020
Apr5g1231 849 ProSiteProfiles Ankyrin repeat region circular profile. 537 568 - -
Apr5g1231 849 Gene3D - 44 280 - -
Apr5g1231 849 ProSiteProfiles Ankyrin repeat region circular profile. 570 601 - -
Apr5g1231 849 SMART cnmp_10 359 476 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1231 Apr-Chr5 16762125 16767201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1231 1 849 Ion Channels AT2G25600 59.814 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1231 K21867 - gmx:100802964 1337.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0163 9 2137537 2148161 Apr5g1231 5 16762125 16767201 PCT