Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1221 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTATCTAGTCAAGAGGAATTTGAAAACTTCTGCTCAGGCTTTTCAGGATGAAGGCAAAGTATCCTCGGACCCTGTTGCTATTGATGCTCCTGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCAAGGACTAATGAGAAGCACTCAGAGGTTGCTGCGTCATATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAGCAACAACAGCAGCAGCCACAACCACCGCAGTCACAACATCAACAACAGCAGCAGCAACAGCACATGCAAATGCAGCAGCTCCTGAGAGCACAGCAACAACAGCAACAGCAACAGCAACAGCAACAGCAACAACAACAACAGCAGCAACAACAGCAACAGCCACAACCACAGCAACAGCAGCCACCACCACAACAACAGCAAAGTAGGGATAGGGCTCATCTTTTGAATGGTAGTGCAAATGGGTTAGTTGGAAACTCCGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGGTTAAAACTTTCCCTTCAGAGGGATTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAATCATGCATCAATGTTGAAGTCAGCTGCAGCTACTGGCCAGCCTTCAGGGCAAGTTTTGCATAATGCTGGTGGTGGGATGTCTCCACAAGTCCAAGCTCGTAGTCAGCAATTACCAGGGTCTACTCTGGATATAAAGAGTGAGATTAATCCTGTGTTAAATCCCAGAGCTGGAGGTCCTGAAGGATCATTGATAGCAATGCCTGGACCGAATCAAGGTGGCAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTTTGGAGCAACTACGCTCTGGTCTACTTCAGCAACAAAAACCTTTCATGCAGGCTCCTCAGCCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTCATGCTAGCGCAACAAAATTTGGCATCACCGTCTGCCAGCGAAGAAAGTAGAAGACTAAGAATGCTATTGAATAATAGTAGGGGTATTGGTCTAAATAAGGATGGTCTTTCAAATCCTGTTGGTGATGTGGTATCAAATGTTGGATCCCCTCTTCAAGGTGGTGGTCCTCCTTTTCCTCGTGGAGACACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTGCAGCAGCAACATCAACAACAGCCAAGTACCAATGCACAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAATCATAGCATGCATCAGCAAGATAAAGCAGGGGGAGGTGGTGCCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGATCAGGTTTCAAAAAACCAGATCGGGAGAAAGAGAAAGCAGCCTGGATCCTCTTCAGGTCCTGCCAATAGTACAGGAACAGCAAATACAACAGGGCCATCACCAAGTTCAGCACCCTCAACTCCCTCAACTCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCTCATAGTGGTAGTTCTTCAAAGCCTCCAATGATGTTTGGTGCTGATGGCACTGGAACCCTTACATCACCTTCAAACCAGTTGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGACAATGTCGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACGGTTGGCCGTTGTATGGATGTAAGCAAAGGATTCACATTTTCTGATGAAAATTCTGTGCGTGCAAGCACAAGCAAAGTTGTCTGTTGCCATTTCTCATCTGATGGGAAATTACTTGCAAGTGGTGGCCATGACAAAAAGGTTGTTTTATGGTATGCCGATTCTCTAAAACAAAAAGCTACGCTTGAAGAACATTCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCCTCATTTGACAAAACTGTTAGGGTTTGGGATGTTGACAATCCTGGGTATTCACTTCGCACCTTTACGGGGCATTCTTCAACTGTTATGTCTCTAGATTTTCATCCAAATGAAGAAGACCTTATCTGCTCTTGTGATGGCAATAGCGAGATACGGTATTGGAGCATAAAAAATGGTAGTTGTGCTAGAACTGCCAAGGGTTGCACCACCCAGTTGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCAGAAAACATTGTGTCTATATTTGATGTGGAGACACAAACATGCCGATATTCATTGAAGGGACACACAAAGACAGTAAATTGTGTGTGTTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGTCTCTTAGATCAGGAAGTGAAGGAGAATCTATTCATGAACTTAGCTGTAGTGGCAATAAGTTTCATGCATGTGTTTTCCACCCAACATACCCTTCATTGCTGGTCATTGGATGTTACCAGTCATTGGAACTCTGGAACACGTCCGAGAACAAGACAATGACTCTGTCTGCTCATGATGGTCTTATTACTGCTTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCATCAAACTTTGGAGATGA 2679 0.4476 MSQTNWEADKMLDVYIHDYLVKRNLKTSAQAFQDEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQPQPPQSQHQQQQQQQHMQMQQLLRAQQQQQQQQQQQQQQQQQQQQQQQPQPQQQQPPPQQQQSRDRAHLLNGSANGLVGNSGTANALATKMYEERLKLSLQRDSLDDAAMKQRFGENMGQLLDPNHASMLKSAAATGQPSGQVLHNAGGGMSPQVQARSQQLPGSTLDIKSEINPVLNPRAGGPEGSLIAMPGPNQGGNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNSRGIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKLKLAQLQQQHQQQPSTNAQQQQLQQHALSNQQSQTSNHSMHQQDKAGGGGASVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPPMMFGADGTGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSDENSVRASTSKVVCCHFSSDGKLLASGGHDKKVVLWYADSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSSTVMSLDFHPNEEDLICSCDGNSEIRYWSIKNGSCARTAKGCTTQLRFQPRLGRYLAAAAENIVSIFDVETQTCRYSLKGHTKTVNCVCWDPSGELLASVSEDSVRVWSLRSGSEGESIHELSCSGNKFHACVFHPTYPSLLVIGCYQSLELWNTSENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWR* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1221 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 608 639 - -
Apr5g1221 892 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 892 IPR044716 GO:0003714
Apr5g1221 892 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 892 - -
Apr5g1221 892 SMART WD40_4 768 806 IPR001680 GO:0005515
Apr5g1221 892 SMART WD40_4 812 851 IPR001680 GO:0005515
Apr5g1221 892 SMART WD40_4 853 892 IPR001680 GO:0005515
Apr5g1221 892 SMART WD40_4 643 682 IPR001680 GO:0005515
Apr5g1221 892 SMART WD40_4 601 640 IPR001680 GO:0005515
Apr5g1221 892 SMART WD40_4 729 765 IPR001680 GO:0005515
Apr5g1221 892 SMART WD40_4 686 726 IPR001680 GO:0005515
Apr5g1221 892 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Apr5g1221 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 608 649 IPR001680 GO:0005515
Apr5g1221 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 650 685 - -
Apr5g1221 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 860 892 IPR001680 GO:0005515
Apr5g1221 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 775 815 IPR001680 GO:0005515
Apr5g1221 892 MobiDBLite consensus disorder prediction 463 523 - -
Apr5g1221 892 ProSitePatterns Trp-Asp (WD) repeats signature. 669 683 IPR019775 -
Apr5g1221 892 SMART Lish 8 40 IPR006594 GO:0005515
Apr5g1221 892 CDD WD40 608 892 - -
Apr5g1221 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 693 735 IPR001680 GO:0005515
Apr5g1221 892 Gene3D - 737 892 IPR015943 GO:0005515
Apr5g1221 892 Gene3D - 586 736 IPR015943 GO:0005515
Apr5g1221 892 MobiDBLite consensus disorder prediction 414 452 - -
Apr5g1221 892 Pfam WD domain, G-beta repeat 770 806 IPR001680 GO:0005515
Apr5g1221 892 Pfam WD domain, G-beta repeat 647 682 IPR001680 GO:0005515
Apr5g1221 892 Pfam WD domain, G-beta repeat 855 891 IPR001680 GO:0005515
Apr5g1221 892 Pfam WD domain, G-beta repeat 689 725 IPR001680 GO:0005515
Apr5g1221 892 Pfam WD domain, G-beta repeat 613 639 IPR001680 GO:0005515
Apr5g1221 892 Pfam LisH 10 36 IPR006594 GO:0005515
Apr5g1221 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 860 892 - -
Apr5g1221 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 775 811 - -
Apr5g1221 892 SUPERFAMILY WD40 repeat-like 608 891 IPR036322 GO:0005515
Apr5g1221 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 650 685 IPR001680 GO:0005515
Apr5g1221 892 MobiDBLite consensus disorder prediction 414 556 - -
Apr5g1221 892 MobiDBLite consensus disorder prediction 385 404 - -
Apr5g1221 892 MobiDBLite consensus disorder prediction 137 160 - -
Apr5g1221 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 693 731 - -
Apr5g1221 892 Coils Coil 104 143 - -
Apr5g1221 892 MobiDBLite consensus disorder prediction 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1221 Apr-Chr5 16667520 16677821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1221 653 891 Miscellaneous Gene Families AT5G08390 24.390 9.15e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Apr5g1221 WD40 0.0038 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1221 - - gmx:100816263 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0150 9 1804267 1816757 Apr5g1221 5 16667520 16677821 PCT