Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1216 ATGGATAGAGTAAACACATTCTGTGCCAAAGACGAAGAGCGTCCACTTCGAATAACCAGAGCAAGGGCTAGAGCATCGAGAGGGATTCCTCCCAATGCAAAACCTTCTTTGCAAAAGGAGCGCAAAAATGCACAGTGCAAAAGAGCAGCTTCTCCTGTTCTTGTTCCAGTTGTTCTTCAGTATAAGAGAAGGGCGGTGCTTACAGATGTAACTAACATATGTGATGATAAGGCATCGAAGTATCGGGCTAAAGGAGTTTATGAGAAGAAAAACACAAAGCTAGCTTCAGGTGTTTATATTGAAGTTTCGTCATCGCAAGAGGATGTTAGAGCAAATTTAGCTGAAGAATTATCCGCAATAAGGATGGTAGAATCAAATGAAACCATTGCTGCAGCTACTTTGGCAGACACTGTGCATTCAATGCAAGACTCTCTGAATTCTGATGAACTCCTAAGCTTGCCAAACGAAGACATAGATATGATTTGTGAGAAGCTAAGAACTTCAGACTGCCTGACCATTGTGGACATTGATTCAGAGTTAAAGGATTCTCAAGTTTGGAGTTCTTATGCCCCTGACATATACAACAAAATTCGAGTCACAGAGCTTGAAAGGAGACCATTAACCAACTACATGGATAAATTGCAACAAGATATTACTCCAAGGATGCGTGGAATTCTGGTTGATTGGCTTGTGGAGGTTTCTGAGGAATACAAGTTGGTCCCGGACACTCTTTATCTCACGGTGAACCTAATTGATCGGTGTCTCTCAACAAAATTCATTCAGAAGCAAAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTGCGCCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTATTAAAAATGGAGAGTGAAATTCTAAACCTTCTGCATTTTCAGCTTCTTGTTCCCACAATCAAACCATTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGTTCCTTGTGTTCAACTGGAATTCCTAGCAAATTATTTAGCAGAGCTTACTCTAGTAGAATATAGCTTCCTCCAATTTCTACCTTCCCTTGTAGCTGCATCTGCTGTGTTCCTGGCCAGATGGACCCTCAATCACTTAGAACATCCATGGAATCCAATTTTGGAGCACTACACAAACTACAAAGCTTCAGACCTCAAAACTGTTGTTCTAGCCCTGGAAGATCTGCAACTTAATACCAAAGGCTGTTCCCTGAGTGCTATACGTGATAAGTATAAACAACAGAAGTTCAATTGTGTGGCAAACCTCTCTCCAAAACCGATGAAGTCACTGTTCCAAGTTCATGTGTAA 1365 0.4117 MDRVNTFCAKDEERPLRITRARARASRGIPPNAKPSLQKERKNAQCKRAASPVLVPVVLQYKRRAVLTDVTNICDDKASKYRAKGVYEKKNTKLASGVYIEVSSSQEDVRANLAEELSAIRMVESNETIAAATLADTVHSMQDSLNSDELLSLPNEDIDMICEKLRTSDCLTIVDIDSELKDSQVWSSYAPDIYNKIRVTELERRPLTNYMDKLQQDITPRMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRCLSTKFIQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYTKEEVLKMESEILNLLHFQLLVPTIKPFLRRFIQAAQSSYKVPCVQLEFLANYLAELTLVEYSFLQFLPSLVAASAVFLARWTLNHLEHPWNPILEHYTNYKASDLKTVVLALEDLQLNTKGCSLSAIRDKYKQQKFNCVANLSPKPMKSLFQVHV* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1216 454 Gene3D - 192 440 - -
Apr5g1216 454 MobiDBLite consensus disorder prediction 21 45 - -
Apr5g1216 454 PANTHER CYCLINS 43 450 IPR039361 -
Apr5g1216 454 SMART Cyclin_C_2 321 444 IPR004367 -
Apr5g1216 454 PANTHER CYCLIN-A2-4 43 450 - -
Apr5g1216 454 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 397 454 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr5g1216 454 CDD CYCLIN 319 411 IPR013763 -
Apr5g1216 454 Gene3D - 206 319 - -
Apr5g1216 454 SUPERFAMILY Cyclin-like 320 444 IPR036915 -
Apr5g1216 454 Pfam Cyclin, C-terminal domain 321 443 IPR004367 -
Apr5g1216 454 Pfam Cyclin, N-terminal domain 192 318 IPR006671 -
Apr5g1216 454 SUPERFAMILY Cyclin-like 182 318 IPR036915 -
Apr5g1216 454 CDD CYCLIN 222 311 IPR013763 -
Apr5g1216 454 SMART cyclin_7 325 413 IPR013763 -
Apr5g1216 454 SMART cyclin_7 228 312 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1216 Apr-Chr5 16615398 16619419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1216 9 450 Core Cell Cycle Gene Families AT5G25380 53.097 3.82e-149 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1216 K06627 - gmx:100807750 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1216 5 16615398 16619419 Apr5g1216 5 16615398 16619419 ECH
Apr5g1216 5 16615398 16619419 Apr9g0145 9 1722565 1729171 ECH
Apr9g0145 9 1722565 1729171 Apr5g1216 5 16615398 16619419 PCT