Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1214 ATGTTAATGGACTTCGTAAGACCTGAAGAAGCTCAATTTGACACTTACCCGTTGTTAATGGCGCGACCCACGCACCACGTCATTGACATAACCGGAACGGCAACGTTTGAAGCTGCTGCTTCTTCTTTTTCAAATTCTAGAACGAGTAGTAGTAATAATAATAATAATAATACACGTAGGCATAGGAGTCCCTTGAATTCGGGGCTATGGATATGTATTGAGCTAGTCTTGACGTTAAGCCAGATTGCTGCTTGTGTTGTTGTTTTGTCTCTGTCAAAGCACGAGCACCCACGCGCCCCTTTGTTTGCGTGGATTGTCGGTTATGCTTCCGGTTGTGTTGCTTCCCTTCCTCTACTCTTTTGGCGTTATTATCATACTAGTCATGTTCGAGACCAAGATTCCTCTTCCAATTATGATCCTTCTGGAACTCTTCTTTCCAGTTCCACCGTTAATGGAGAGGATGGTGTTATGGTGGTTTCTAGAAGCAATCAAGATTCCTGGTTGATGAATGCCAGATTGAAGCTACTTGTCGAATACTTCAAGATTGCCGTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATTTTTGGTGGACATTCATCTGCTGATGAAGCGCCTAACTTGTACAGGTTATGTGTAGTGTTTCTTACTTTTAGCTGTATCGGTTATGCCATGCCCTTCATTCTTTGTGCAACAATATGCTGCTGTCTGCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATCTGACTCAAACCCAAGGGGCAACCTCTGAATCCATTAATGCACTGCCAACTTACAAGTTCAAAACGAAGAAAGATAAAAGCAGGGATGAAAGCAACTCAAATGCCAGTGAAGGTGGAATTGTGGCTGCAGGTACTGAAAAGGAACGCATGATTGCCGGGGAAGATGCCGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCACCTTTTTCACAAAGACTGTGTAGACAAGTGGTTGAGGATAAATGCATTATGCCCCCTTTGCAAGAGTGAGGTTGGAGAGAACGTAACAACAGGATCAGTCTCTAGGGATGATGCCAGCCAGCATCAGGGTGAAAGCAGGGATGAGAATGGCATCGCCAATACCTCATAA 1161 0.4358 MLMDFVRPEEAQFDTYPLLMARPTHHVIDITGTATFEAAASSFSNSRTSSSNNNNNNTRRHRSPLNSGLWICIELVLTLSQIAACVVVLSLSKHEHPRAPLFAWIVGYASGCVASLPLLFWRYYHTSHVRDQDSSSNYDPSGTLLSSSTVNGEDGVMVVSRSNQDSWLMNARLKLLVEYFKIAVDCFFAIWFVVGNVWIFGGHSSADEAPNLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLTQTQGATSESINALPTYKFKTKKDKSRDESNSNASEGGIVAAGTEKERMIAGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLRINALCPLCKSEVGENVTTGSVSRDDASQHQGESRDENGIANTS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1214 386 Pfam Ring finger domain 311 352 IPR001841 -
Apr5g1214 386 ProSiteProfiles Zinc finger RING-type profile. 311 352 IPR001841 -
Apr5g1214 386 SUPERFAMILY RING/U-box 302 358 - -
Apr5g1214 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 360 IPR013083 -
Apr5g1214 386 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 39 378 - -
Apr5g1214 386 SMART ring_2 311 351 IPR001841 -
Apr5g1214 386 MobiDBLite consensus disorder prediction 361 386 - -
Apr5g1214 386 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 39 378 - -
Apr5g1214 386 CDD RING-H2_RNF111_like 310 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1214 Apr-Chr5 16602231 16605817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1214 48 363 C3H Transcription Factor Family AT1G80400 56.881 9.66e-140 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1214 - - gmx:100795904 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1214 5 16602231 16605817 Apr5g1214 5 16602231 16605817 ECH
Apr5g1214 5 16602231 16605817 Apr9g0142 9 1674431 1682010 ECH