Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1212 ATGGATTACTACAATATATTGAAGGTTGACAGATATGCTACAGAGGATGATCTGAAGAAATCATATAGAAAATTGGCCATGAAATGGCACCCTGACAAGAACCCCACCAACAAACAAGAAGCTGAAGCCAAATTCAAACAAATTTCTGAGGCCTACGAGGTATTAAGTGATCCCCAGAAAAGGGTAATTTATGATCAGTATGGAGAGGAAGGGTTGAAAGATAGGCCACCACCCGGTAATGAACCATCATCAAGTGGGTTTAATCCCAGAAATGCAGAGGATATTTTTGCAGAATTCTTTGGAAGTAGCCCTTTTGGTTTTGGATCATCTGGGCAAGGGAGGTCCAAGATGTTCCACACTGATGGAGCGGCAACATTTGGTGGATTTAGTGGAAGTATGCCAAAGAAGCCACCACCTGTGGAGACCAAATTGCCTTGCAGTTTGGAGGAATTATACTCTGGATCTACCAGGAAAATGAAGATCTCAAGGACTGTCATGGATGCCAATGGACAGGCAATTCCAGAAACAGAAATATTAACCATTGATGTGAAGCCTGGTTGGAAGAAAGGGACAAAGATTACTTTCCCAGATAAAGGGAATCAGCAACCAAATCAACTACCAGCAGATCTTGTGTTTGTGATTGATGAGAAGCCTAATGATTTTTACAAGAGAGATAGCAATGACCTCATTGTGAGTAAAAGGGTGTCACTAGCTGAGGCCATTGGAGGAACTTCAATAAATCTCACAACACTTGATGGACGTAGTTTAACTATTCCAGTGAATGACATTGTGAGCCCCGGTTATGAACTAGTTGTTGCAAATGAAGGCATGCCAATAACAAAGGAACCTGGTCATAGGGGTGATTTGAGGATCAAATTTGATGTTAAGTTCCCTACAAGATTGACCCCAGAGCAACGAGCAGGACTCAAGAGAGCATTGGGAAGTTGA 948 0.4209 MDYYNILKVDRYATEDDLKKSYRKLAMKWHPDKNPTNKQEAEAKFKQISEAYEVLSDPQKRVIYDQYGEEGLKDRPPPGNEPSSSGFNPRNAEDIFAEFFGSSPFGFGSSGQGRSKMFHTDGAATFGGFSGSMPKKPPPVETKLPCSLEELYSGSTRKMKISRTVMDANGQAIPETEILTIDVKPGWKKGTKITFPDKGNQQPNQLPADLVFVIDEKPNDFYKRDSNDLIVSKRVSLAEAIGGTSINLTTLDGRSLTIPVNDIVSPGYELVVANEGMPITKEPGHRGDLRIKFDVKFPTRLTPEQRAGLKRALGS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1212 315 SMART dnaj_3 1 60 IPR001623 -
Apr5g1212 315 Pfam DnaJ C terminal domain 140 298 IPR002939 -
Apr5g1212 315 PRINTS DnaJ domain signature 4 22 IPR001623 -
Apr5g1212 315 PRINTS DnaJ domain signature 22 37 IPR001623 -
Apr5g1212 315 PRINTS DnaJ domain signature 40 60 IPR001623 -
Apr5g1212 315 PRINTS DnaJ domain signature 60 79 IPR001623 -
Apr5g1212 315 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 314 - -
Apr5g1212 315 CDD DnaJ_C 138 301 - -
Apr5g1212 315 Gene3D - 139 217 - -
Apr5g1212 315 ProSiteProfiles dnaJ domain profile. 2 68 IPR001623 -
Apr5g1212 315 SUPERFAMILY HSP40/DnaJ peptide-binding domain 222 307 IPR008971 GO:0006457|GO:0051082
Apr5g1212 315 MobiDBLite consensus disorder prediction 65 88 - -
Apr5g1212 315 Pfam DnaJ domain 2 65 IPR001623 -
Apr5g1212 315 Gene3D DnaJ domain 1 112 IPR036869 -
Apr5g1212 315 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 314 - -
Apr5g1212 315 ProSitePatterns Nt-dnaJ domain signature. 45 64 IPR018253 -
Apr5g1212 315 CDD DnaJ 2 57 IPR001623 -
Apr5g1212 315 SUPERFAMILY HSP40/DnaJ peptide-binding domain 139 218 IPR008971 GO:0006457|GO:0051082
Apr5g1212 315 SUPERFAMILY Chaperone J-domain 1 111 IPR036869 -
Apr5g1212 315 Gene3D - 218 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1212 Apr-Chr5 16589692 16591980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1212 3 119 C2H2 Transcription Factor Family AT1G74250 32.231 8.24e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1212 K09510 - gmx:100796426 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1212 5 16589692 16591980 Apr5g1212 5 16589692 16591980 ECH