Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1207 ATGCACATCAAATCGGCGCAGTCATCATTTCGGGATCGGACGCACGAATTCCAGAGCATTGCGGAGAGATTGAAGAAGTCAGGAACGGCGCCAAATGGACCCAGCAGTAGTAGCACTAGTTCATCCAGATCGGAGGAACAACGATCTGCTATTGCAAACCAATCAGAGTTTAATCGTAGAGCTTCCAAAATTGGCTATGGGATTCACCAAACGTCTCAGAAGCTCGCCAAGCTCGCAAAGTTGGCTAAAAGAACTTCGGTTTTTGATGACCCAACCATGGAAATCCAAGAGCTTACCGGTGTTATTAAGCAAGATATTACTGCGCTGAATTCTGCGGTTGTGGATCTTCAATTACTCTGCAACTCTAGAAATGAGAGTGGAAATGCTTCAACCGACACAGCTACCCATTCAACTACGGTTGTTGATGACCTCAAGACCCGGTTGATGAGCACCACCAAAGAGTTTAAGGATGTTCTCACTATGCGAACTGAGAACTTGAAAGTGCATGAGAATAGGAGGCAATTGTTTTCGTCCTCTGCTTCTAAGGAATCTTCAAATCCTTTTGTCCGGCAACGCCCGTTGACTACAAGGTCGGCTGCTAGTAATTCTAATGCCCCTGCACCCCCATGGGCTAGTGGGTCACCATCTTCATCTCAGTCGTTTCCTAAGAATCAGGTGGATGGGGAGAGTCAACCATTGCTGCAACAACAGCAGCAGCAACAGCAGCAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCATGAGCTCAGCAGCATCTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCGATCAGGATTGATGAAAACATGGACGATACATTGGCAAACGTAGAGGGGGCACAAGGGGCTTTATTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTTCTTATGGTTTTCTTATTTTTTGTGGCATAG 1026 0.4464 MHIKSAQSSFRDRTHEFQSIAERLKKSGTAPNGPSSSSTSSSRSEEQRSAIANQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNASTDTATHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSSSASKESSNPFVRQRPLTTRSAASNSNAPAPPWASGSPSSSQSFPKNQVDGESQPLLQQQQQQQQQVVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1207 341 SMART tSNARE_6 244 311 IPR000727 -
Apr5g1207 341 MobiDBLite consensus disorder prediction 170 239 - -
Apr5g1207 341 Gene3D - 51 304 - -
Apr5g1207 341 PANTHER SYNTAXIN 2 340 IPR045242 -
Apr5g1207 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Apr5g1207 341 MobiDBLite consensus disorder prediction 29 56 - -
Apr5g1207 341 CDD SNARE_syntaxin5 252 330 - -
Apr5g1207 341 MobiDBLite consensus disorder prediction 1 56 - -
Apr5g1207 341 PANTHER SYNTAXIN-32-LIKE 2 340 - -
Apr5g1207 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
Apr5g1207 341 MobiDBLite consensus disorder prediction 1 22 - -
Apr5g1207 341 MobiDBLite consensus disorder prediction 172 239 - -
Apr5g1207 341 Pfam SNARE domain 285 337 IPR000727 -
Apr5g1207 341 SUPERFAMILY t-snare proteins 54 304 IPR010989 GO:0016020|GO:0016192
Apr5g1207 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1207 Apr-Chr5 16541463 16546865 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1207 1 341 SNARE and Associated Proteins AT3G24350 65.840 2.22e-147 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1207 K08490 - gmx:100778493 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1207 5 16541463 16546865 Apr5g1207 5 16541463 16546865 ECH