Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1206 ATGCACGTCAAATCGGCGCCGACGTCGTTTCGGGATCGGACACAAGAATTCCACAGCATTACAGAGAGGTTGAAGAAATCGGGATCAGGATCCAATGGACCCAGCAGTAGTAGCACTAGTTCATCTAAATCGGAGGAACAACGATCTACTATTGCAAATCAATCAGAGTTTAATCGAAGGGCTTCCAAAATTGGCTATGGGATTCACCAAACGTCTCAGAAGCTCGCCAAGCTGGCAAAGTGTAAGCAATTTTGGTTGAATTATAAGCTTATTTTATTTGCAGTGGCAAAAAGAACTTCGGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTCACTAGTGTTATTAAGCAAGATATTACTGCGCTGAATTCTGCGGTTGTGGATCTTCAATTGCTCTCCAACTCTAGAAATGAGAGTGGAAATGTTTCTGCCGACACAACTAGTCATTCAACCACTGTTGTTGATGACCTCAAGACACGATTGATGAGCACAACCAAAGAGTTTAAGGATGTTCTCACCATGCGAACTGAGAACATGAAAGTGCATGAGAATAGAAGACAGTTGTTTTCGTCTTCTGCCTCTAAGGATTCTGCAAATCCTTTCATCCGTCAACGGCCATTAGCTACAAGGGCGGCTGCTAGTACTTCTAATGCCCCTGCACCTCCCTGGGCTAGTGGGTCGCCATCTTCTTCTCAGCTGTTCCCTAAGAAGCAAGTGGATGGGGAGAGTCAACCGTTGTTGCAACAGCAGCAGCAGCAGCAGGAGGAGGTAGTTCCATTGCAAGACAGTTATATGCAAAGCAGAGCTGAAGCACTTCAGAATGTTGAGTCCACTATTCATGAGCTTAGCAGCATCTTTAATCAACTAGCAACACTAGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTAGAGGGGGCGCAAGGGGCTTTATTGAAATATCTGAACAGCATATCTTCTAATAGGTGGTTGATGATCAAAATTTTCTTTATATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1068 0.4316 MHVKSAPTSFRDRTQEFHSITERLKKSGSGSNGPSSSSTSSSKSEEQRSTIANQSEFNRRASKIGYGIHQTSQKLAKLAKCKQFWLNYKLILFAVAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLLSNSRNESGNVSADTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENMKVHENRRQLFSSSASKDSANPFIRQRPLATRAAASTSNAPAPPWASGSPSSSQLFPKKQVDGESQPLLQQQQQQQEEVVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFILIFFLMVFLFFVA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1206 355 MobiDBLite consensus disorder prediction 24 55 - -
Apr5g1206 355 SUPERFAMILY t-snare proteins 54 318 IPR010989 GO:0016020|GO:0016192
Apr5g1206 355 Gene3D - 51 318 - -
Apr5g1206 355 SMART tSNARE_6 258 325 IPR000727 -
Apr5g1206 355 Pfam SNARE domain 299 351 IPR000727 -
Apr5g1206 355 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 5 26 IPR021538 -
Apr5g1206 355 ProSitePatterns Syntaxin / epimorphin family signature. 269 308 IPR006012 GO:0005484|GO:0006886|GO:0016020
Apr5g1206 355 MobiDBLite consensus disorder prediction 209 254 - -
Apr5g1206 355 MobiDBLite consensus disorder prediction 1 23 - -
Apr5g1206 355 MobiDBLite consensus disorder prediction 1 55 - -
Apr5g1206 355 PANTHER SYNTAXIN-32-LIKE 2 354 - -
Apr5g1206 355 CDD SNARE_syntaxin5 266 336 - -
Apr5g1206 355 PANTHER SYNTAXIN 2 354 IPR045242 -
Apr5g1206 355 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 263 325 IPR000727 -
Apr5g1206 355 MobiDBLite consensus disorder prediction 210 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1206 Apr-Chr5 16535385 16539926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1206 1 355 SNARE and Associated Proteins AT3G24350 65.565 2.29e-152 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1206 K08490 - gmx:100811494 490.345