Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr5g1202 | ATGGGAGAGGTAGCAGTAATGCACTCTGAGCCTCTGCAGTTTGAGTGCCATGACATGAAGCACATGACTGACAAAGATGTGTATAATCTTCCATCAAATGCAGAGCAAATACTTGGAGAAGAGTCGAGTCAATCAACAGCCCACAAAGAGATCAATGACTCACAAGAGAGAGGATATATGGAATATGGATGTCAACATTACCAAAGAAGATGCCGTATTAGAGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATCGATAAGAAGCAGAGACATGATATTCCCCGCCATCAAGTTAAACAGGTGATTTGTTCACTTTGTGGGACTGAACAAGAGGTTCAGCAACACTGTATCAACTGTGGTGTCTGTATGGGCAAGTACTTCTGTGGGACTTGTAAACTCTTTGATGATGATGTATCTAAGCAACAGTACCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGAAGTGAAAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTACTCAACTCTGCTGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCATGATTGCCCCATTTGTTTTGAGTTTTTGTTTGAATCTGTGAATGATGTCACTGTTTTGCTGTGTGGACATACAATCCATAAGAGCTGCCTCAAGGAAATGAGGGAACATTTCCAGTATGCTTGCCCCCTCTGCTCAAAGTCGGTTTGTGATATGTCAAAGGTATGGGAGAAATTTGACTTGGAGATTGCGGCTACACCAATGCCCGAACCGTATCAAAACAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAACTTCTCACGTTCAGTTCCATCTTGTTGCACAAAAGTGCTTGAACTGCAAATCCTACAACACACGACAAACAAGAGGCTGA | 930 | 0.4247 | MGEVAVMHSEPLQFECHDMKHMTDKDVYNLPSNAEQILGEESSQSTAHKEINDSQERGYMEYGCQHYQRRCRIRAPCCNEIFDCRHCHNEAKNNINIDKKQRHDIPRHQVKQVICSLCGTEQEVQQHCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPICFEFLFESVNDVTVLLCGHTIHKSCLKEMREHFQYACPLCSKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVWILCNDCGKTSHVQFHLVAQKCLNCKSYNTRQTRG* | 310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr5g1202 | 309 | SUPERFAMILY | RING/U-box | 199 | 248 | - | - | |
| Apr5g1202 | 309 | Pfam | Zinc-ribbon | 247 | 305 | IPR039512 | - | |
| Apr5g1202 | 309 | SUPERFAMILY | CHY zinc finger-like | 61 | 135 | IPR037274 | GO:0008270 | |
| Apr5g1202 | 309 | Pfam | Ring finger domain | 199 | 242 | IPR001841 | - | |
| Apr5g1202 | 309 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 135 | 199 | IPR017921 | - | |
| Apr5g1202 | 309 | ProSiteProfiles | Zinc finger CHY-type profile. | 57 | 133 | IPR008913 | GO:0008270 | |
| Apr5g1202 | 309 | PANTHER | CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN | 22 | 309 | - | - | |
| Apr5g1202 | 309 | Gene3D | - | 271 | 309 | - | - | |
| Apr5g1202 | 309 | ProSiteProfiles | Zinc finger RING-type profile. | 200 | 243 | IPR001841 | - | |
| Apr5g1202 | 309 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 22 | 309 | - | - | |
| Apr5g1202 | 309 | SMART | ring_2 | 200 | 242 | IPR001841 | - | |
| Apr5g1202 | 309 | SUPERFAMILY | Zinc hairpin stack | 136 | 193 | IPR037275 | - | |
| Apr5g1202 | 309 | Pfam | CHY zinc finger | 64 | 145 | IPR008913 | GO:0008270 | |
| Apr5g1202 | 309 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 262 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr5g1202 | Apr-Chr5 | 16489645 | 16495575 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr5g1202 | 62 | 305 | C2H2 Transcription Factor Family | AT3G18290 | 41.200 | 5.84e-53 | 184 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr5g1202 | K10144 | - | gmx:100812023 | 634.409 |
Event-related genes