Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1197 ATGGAGGATCAAGCGAATCAAGCTCCACCGGCACGCGATAAAGAGGAGGAGGATTCTAAGAAGGAAGAAGAGGAATTAATCGCAAAGGTTAACAAGCTCATGGAAAACATCACTTCTGCACCTGATAACCCTAAACCCACCGTCCTTCATGCTCTCGCTTCTATTCTCGAAACTCAAGAGTCACGATACATGGAAGAGAATGGTTATTCTTCCTCCAGTACTGCCCGTGCTGCCCATATCATTGGTCGGCTTGGCGGTTTAATTCGGGAAAATGATGAGTTCTTTGAGTTGATATCTTCTAAGTTTCTCTCAGAAACAAGATACTCCACCTCTATTCAAGCTGCCGCTGCCAGACTTCTCCTATGCTGTTCCCTGACCTGGATTTATCCTCATGTTTTTGAAGAATCCGTCTTGGAAAACATAAAAAATTGGGTGACGGATGATAGTGCTAGGCTTTCTGCTGAAGAGCAACATCTGAAGCATAATACAGGGAGGAGGGAGGCCTCAGATTCTGAAATGTTGAAAACCTATTCTACTGGAGTCCTTGCTGTGTGTTTGGTCGGCGGAGGTCAAGTAGTGGAAGATGTATTGACATCTGGCTTGTCAGCAAAGCTTATGCGTTATCTACGCTTGCGTGTACTGGGAGAGACGAATAGCAGCCAAAAAGATGTTACCCATATAACAGAGAGTAGGCATGCGACTGGGAATACTTCAGGCAGAGGTAGAGATGATGGTCGTGGTAGGTTTCGCCAGCTCCTTGAATCAAGTCATTTGGATGATACAAGGATGATTGATGAGAGGCCTTTAGATGACGTAACTCTTGAAAGGGGTCCAGATAGAAGCATTAGTGGACAAACTTGCCAAGAAGAATCTTGGATAGATGGTGAACCACCTGATGAGCTTGGTGAAGGTGCTGATATCCGTGAGGTAGATTCTGATGGGGAGGATAGATGGCGCTGTAGAGATGTTCGTGATGGAAGGATAAAATATGGTGAGCATGATGATAATGTTCGAGATGACTCCTCAAGGCGGCGTGCAAACCGTGGATGGGCAAGATCTAGAGGGAAAGGAAGGGTCAATGAAGGGACTGTAGAAGGTGATTCCATTTTGTCATCTCCTGGTTCTGGTAGTAGATTAGGACAGGGGCGAACTGTTAGAGATAGAAGCACATTGAGGAATGCTGACGTTAGAAGGTTGGCTGACTCTAAGAAGACCCTTGTGAAGACCACTTCTGAGGCTTCTGAAAGAGAGGATAATGATGATTGTTTCCAAGAATGCCGTATTGGAAGTAAAGACATCACTGATCTTGTTCGAAAAGCAGTCCGAGCTGCCGAAGCAGAAGCTAGATCAGCCAATGCACCAGGAGAGGCTGTTAAAGCAGCTGGTGATGCTGCTGCTGACCTTGTTAAAACTGCAGCTTCAGAGGAATATAAATCCACTAATGATGAAGAAGCAGCTTTTTTGGCTGCTTCAAAAGCTGCATCGACTGTTGTTGATGCTGCATCTGCAGTTGAAGTTTCAAGGAGCTCTATCTGCAAAAATACTGAGACAGAGAATGTGAGTGGCAAAGAAACAGAATCTAGTGAGGATGTTGAAGATTACTTCATTCCAGATACTCAGTCACTTGCACAGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGTTACTTGGAGAATATGTAGAAGTTCTTGGCCCAGTGTTGCACGAGAAGGGGGTTGATGTGTGTCTTGCACTTCTACAGCAGAATTCTAAACATCGGGAGGCATCCAAGGTTGCTTTGCTGTTGCCTGATGTCATGAAGCTAATCTGTTCTTTGGCTGCACACAGGAAATTTGCTGCACTATTTGTGGATCGTGGGGGAATGCAAAAGCTGCTTGCTGTCCCCAGAATGGCTCAAACTTTTTTTGGCCTTTCTTCATGTCTGTTTACTATTGGTTCTCTTCAGGGTATAATGGAGCGGGTTTGTGCTCTTCCATCAGATGTTGTTTATCATGTGGTTGAGTTGGCTCTCCAACTCCTTGAGTGCAATCAAGATCAAGCCCGGAAGAATGCAGCATTGTTTTTTGCTGCTGCATTTGTCTTCAGAGCAGTTCTTGATGCCTTTGATTCCCAGGATGGATTGCAGAAATTACTGGGCCTTCTGAATGATGCTGCTTCAGTAAGATCAGGAGTAAATTCTGGAGCCTTGGGTTTATCTAACTCGGGATCACTTCGAAATGATCGATCATCAGCAGAAGTGCTTACATCATCTGAGAAGCAGATAGCTTATCACACCTGTGTTGCTCTGCGGCAATATTTCAGGGCACATCTCCTTGTGTTAGTCGATTCCATTCGTCCAAACAAAAGCAATCGTAGTGCTGCTAGAAATATTCCAAGTGTAAGGGCTGTGTACAAGCCCCTTGATATTAGTAATGAGGCAATGGATGCAGTATTCCTACAATTACAAAAAGATCGGAAGCTAGGTCCTGCATTTGTGAGAACACGATGGCTTGCTGTTGAGCAGTTCCTGGCATCTAATGGACATATTACTATGTTGGAATTGTGTCAGGCCCCGCCTGTGGAGCGGTATCTGCATGATTTGCTTCAGTATGCGTTGGGTGTTCTGCACATTGTTACATTGGTACCTAGCAGTCGTAAGATGATTGTCAATGCAACATTAAGCAATAGTCGAGTTGGTATTGCAGTAATTTTGGATGCAGCGAATATTGCAAGTAATCATGTAGACCCTGAGATAATTCAACCAGCATTAAATGTTTTAGTCAACCTTGTTTGCCCTCCTCCTTCAATTAGCAATAAACCATCTATGGTTACACAAGGTCAGCAGTTTGCGTCTTCCCAAACCTCTAATGGTCCTCCCTTGGAGACTAGAGATAGAAATGCTGAACGTAATATCTCAGATCGAGCTGTTCACATTACTGGCCAGATTGATCCTAGGGAGAGGAATGGGGAACCGAATGCTGTAGACCGAGGCAGTGCTGCGGTCCTTAGTACACAACCTGTTAACAGTACTCCCCAAACTCCTGTTCCTTCTGCAACTTCAGGTTTGGTTGGCGACCGAAGAATATCTCTGGGTGCAGGAGCAGGTTGTGCAGGCCTTGCTGCACAATTGGAACAAGGATATCGTCAGGCAAGAGACGCTGTCCGTTCTAATAATGGTATAAAGGTTCTTCTGCATCTCCTCCAACCGCGCATATATTCACCTCCTGCCGCTCTGGATTGCCTTCGTGCTCTAGCATGTCGAGTCCTGCTTGGATTAGCCAGAGATGATACTATTGCACACATATTGACAAGGCTTCAGGTTGGGAAAAAGCTTTCAGAACTTATTCGGGATTCAGGCAGCCAGACACTGGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAGGCTGCAATTGAGCTAATTGGGATTGTGACTAATTCGGGGCGTGCAAGTACATTGGCTGCTACTGATGCAGCTACTCCTACTTTAAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCCACTCCTATTACTTACCATTCAAGGGAACTCCTGCTCCTTATTCACGAACACCTACAGGCATCTGGATTGATACAAACTGCTTCTGCATTGCTTAAAGAGGCTCAGTTGACTCCTTTGCCATTATTGGTTGCTCCTTCTGCTCTTGCACAACAGCCCACCACACAAGAAGCTTCTTCAACACAAATTCAGTGGCCCTCTGGTCGTACTCCTTCTGGATTTCTCACGAACAAATTAAAGTTTAATGCCAAGGATGAGGATGCTGGCTTAAAAAGTGATTCTGTCTCTGCAAAGAAAAAATCACTGACTTTCTCATCATCTTTTGGTTCACATTCAAGACATCAACTTGTTGATTCTCAGCAGTCATCAGTCAGAAAATGGTTAAGTACTGGGAAAGAGTCTTCTGAAACTAGTATAGTAGAGACTCCATCTGAATCTTCAGTGAAACATAATGTTGATACTGGATCTCAGTATAAAACCCCAATCACCTTGCCAGCGAAACGAAAGTTATCTGATTTAAAGGATATAGCCATGTTTTCATCATCTGGAAAACGACTGAATATTGGGGATCAAGGACTTCGCTCTCCTATTTGTTCAAGTGCAATTCGTAAAAGCAGTCTGCAAACTGATGCTGTTGGGATTTTTACACCAACTGGAAACCTGAGAAATCAACAGGGGCGGTGTACTGGTGACTTTGTAGATGAGAATCAGTACAGTATCTCAACTCCAGGTCAGATGACACCTTCTTCCCAAGTATTAAATGATCTTCAGTCCAACAACACTGAGCGTGTGACATTAGATTCTCTAGTGGTTCAGTATCTGAAGCATCAGCATCGGCAGTGCCCAGCTCCTATTACCACCCTTCCTCCATTATCTCTTCTGCACCCGCATGTCTGTCCTGAACCCAAGCGAAGCCTTGACGCCCCTTCAAATGTGACAGCTCGGCTTGGTACACGTGAATTTAAATATATGTATGGTGGAGTGCATGGGAATCGCAGGGATCGTCAATTTGTTTATAGTCGGTTTAGGCCATGGCGCACTTGTCGGGACGATGCTGGTGCTTTATTAACATGCATTACATTTGTTGGGGACTCTTCTCATATTGCTGTTGGGAGCCATAATGGAGAGCTCAAATTTTTTGACTCCAATAATAACAATGTGGTTGAGAGCTTCACGGGTCACCAGTCTCCTTTGACTCTTGTTCAGTCATTTGTTTCTGGTGAGACCCAGCTTTTGCTTTCTTCAAGCTCCCAAGATGTCAGGTTGTGGGATGCAACATCAATTTTAAGTGGTCCTAGCCATTCTTTTGAAGGGTGCAAAGCTGCCAGGTTTAGCAATTCTGGAAATATATTTGCAGCCTTGTCATCAGAATCTGCACGACGGGAAATCCTCTTGTATGATATCCAAACATGTCAGTTAGAGTCAAAGTTATCAGATACATTTGCAACTTCTACAGGACGAGGTCATGTTTATTCTTTAATCCATTTTAACCCTTCTGACTCAATGCTGCTTTGGAATGGGGTCTTGTGGGACCGGCGGGTTTCTGGGCCTGTTCATCGCTTTGATCAGTTCACAGACTATGGTGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTATAAACTCTGAAGTCTGGGATTTGCGCAAGTTCAGACTGCTACGCAGTGTACCCTCATTAGATCAAACAGCAATAACATTTAATGCACGTGGTGATGTAATGTATGCAATCTTAAGGAGAAATTTGGAGGATGTAATGTCAGCAGTCCACACACGTCGTGTCAAGCATCCTCTTTTTGCAGCTTTCCGCACAGTTGACGCAATAAATTATTCTGACATTGCTACTATCCCTGTTGACCGCTGTGTTCTTGATTTTGCAACGGAGCCAACAGATTCATTTGTTGGGCTGATCACTATGGACGATCAAGATGAGATGTATGCATCTGCCAGAATCTATGAAATTGGTCGTCGAAGGCCAACTGATGATGATTCTGATCCTGATGATGCTGAAAGTGAGGAGGAAGATGAGGATGATGACGATGATGATGCAGATGTTGATCCTCTTTTAGGCCCTGGTCTGGGCGGGGAAAGTGGAAGTGATGCTGATGACATGAGCAATGATGATGATGATGACGACGATGATAGTGTGAGCGAGCTTGATGAAGATGAAGATGGAGATTTCATTTTGGATGATGTAGATTTTGATGGAGGTGGACCTGGCTTGTTGGAGATTGTGACAGAAGGTGATGAGGATGATGATGATAGTCAGGTTCTAGAATCTTTAAGTAGTGACGAAGAGGATTTTGTGGGTAATGGCTTTGGCTATTAA 5832 0.4446 MEDQANQAPPARDKEEEDSKKEEEELIAKVNKLMENITSAPDNPKPTVLHALASILETQESRYMEENGYSSSSTARAAHIIGRLGGLIRENDEFFELISSKFLSETRYSTSIQAAAARLLLCCSLTWIYPHVFEESVLENIKNWVTDDSARLSAEEQHLKHNTGRREASDSEMLKTYSTGVLAVCLVGGGQVVEDVLTSGLSAKLMRYLRLRVLGETNSSQKDVTHITESRHATGNTSGRGRDDGRGRFRQLLESSHLDDTRMIDERPLDDVTLERGPDRSISGQTCQEESWIDGEPPDELGEGADIREVDSDGEDRWRCRDVRDGRIKYGEHDDNVRDDSSRRRANRGWARSRGKGRVNEGTVEGDSILSSPGSGSRLGQGRTVRDRSTLRNADVRRLADSKKTLVKTTSEASEREDNDDCFQECRIGSKDITDLVRKAVRAAEAEARSANAPGEAVKAAGDAAADLVKTAASEEYKSTNDEEAAFLAASKAASTVVDAASAVEVSRSSICKNTETENVSGKETESSEDVEDYFIPDTQSLAQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHREASKVALLLPDVMKLICSLAAHRKFAALFVDRGGMQKLLAVPRMAQTFFGLSSCLFTIGSLQGIMERVCALPSDVVYHVVELALQLLECNQDQARKNAALFFAAAFVFRAVLDAFDSQDGLQKLLGLLNDAASVRSGVNSGALGLSNSGSLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLVLVDSIRPNKSNRSAARNIPSVRAVYKPLDISNEAMDAVFLQLQKDRKLGPAFVRTRWLAVEQFLASNGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNATLSNSRVGIAVILDAANIASNHVDPEIIQPALNVLVNLVCPPPSISNKPSMVTQGQQFASSQTSNGPPLETRDRNAERNISDRAVHITGQIDPRERNGEPNAVDRGSAAVLSTQPVNSTPQTPVPSATSGLVGDRRISLGAGAGCAGLAAQLEQGYRQARDAVRSNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTRLQVGKKLSELIRDSGSQTLGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLIQTASALLKEAQLTPLPLLVAPSALAQQPTTQEASSTQIQWPSGRTPSGFLTNKLKFNAKDEDAGLKSDSVSAKKKSLTFSSSFGSHSRHQLVDSQQSSVRKWLSTGKESSETSIVETPSESSVKHNVDTGSQYKTPITLPAKRKLSDLKDIAMFSSSGKRLNIGDQGLRSPICSSAIRKSSLQTDAVGIFTPTGNLRNQQGRCTGDFVDENQYSISTPGQMTPSSQVLNDLQSNNTERVTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKYMYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFDSNNNNVVESFTGHQSPLTLVQSFVSGETQLLLSSSSQDVRLWDATSILSGPSHSFEGCKAARFSNSGNIFAALSSESARREILLYDIQTCQLESKLSDTFATSTGRGHVYSLIHFNPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTAITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDDDDADVDPLLGPGLGGESGSDADDMSNDDDDDDDDSVSELDEDEDGDFILDDVDFDGGGPGLLEIVTEGDEDDDDSQVLESLSSDEEDFVGNGFGY* 1944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1197 1943 MobiDBLite consensus disorder prediction 932 955 - -
Apr5g1197 1943 SMART Lish 1175 1207 IPR006594 GO:0005515
Apr5g1197 1943 MobiDBLite consensus disorder prediction 1869 1899 - -
Apr5g1197 1943 MobiDBLite consensus disorder prediction 1913 1929 - -
Apr5g1197 1943 MobiDBLite consensus disorder prediction 220 235 - -
Apr5g1197 1943 MobiDBLite consensus disorder prediction 1296 1322 - -
Apr5g1197 1943 MobiDBLite consensus disorder prediction 1833 1854 - -
Apr5g1197 1943 MobiDBLite consensus disorder prediction 365 386 - -
Apr5g1197 1943 MobiDBLite consensus disorder prediction 1820 1943 - -
Apr5g1197 1943 SUPERFAMILY WD40 repeat-like 1511 1740 IPR036322 GO:0005515
Apr5g1197 1943 SMART WD40_4 1552 1592 IPR001680 GO:0005515
Apr5g1197 1943 SMART WD40_4 1597 1635 IPR001680 GO:0005515
Apr5g1197 1943 SMART WD40_4 1509 1549 IPR001680 GO:0005515
Apr5g1197 1943 MobiDBLite consensus disorder prediction 1 24 - -
Apr5g1197 1943 MobiDBLite consensus disorder prediction 932 966 - -
Apr5g1197 1943 Gene3D - 1510 1834 IPR015943 GO:0005515
Apr5g1197 1943 ProSiteProfiles LIS1 homology (LisH) motif profile. 1175 1207 IPR006594 GO:0005515
Apr5g1197 1943 MobiDBLite consensus disorder prediction 236 277 - -
Apr5g1197 1943 PANTHER VPRBP PROTEIN-RELATED 319 952 IPR033270 GO:0016567
Apr5g1197 1943 PANTHER VPRBP PROTEIN-RELATED 14 259 IPR033270 GO:0016567
Apr5g1197 1943 PANTHER VPRBP PROTEIN-RELATED 1265 1820 IPR033270 GO:0016567
Apr5g1197 1943 PANTHER VPRBP PROTEIN-RELATED 993 1279 IPR033270 GO:0016567
Apr5g1197 1943 MobiDBLite consensus disorder prediction 331 347 - -
Apr5g1197 1943 PANTHER BNAA03G51310D PROTEIN 1265 1820 - -
Apr5g1197 1943 PANTHER BNAA03G51310D PROTEIN 319 952 - -
Apr5g1197 1943 PANTHER BNAA03G51310D PROTEIN 14 259 - -
Apr5g1197 1943 PANTHER BNAA03G51310D PROTEIN 993 1279 - -
Apr5g1197 1943 SUPERFAMILY ARM repeat 559 1114 IPR016024 -
Apr5g1197 1943 MobiDBLite consensus disorder prediction 301 315 - -
Apr5g1197 1943 MobiDBLite consensus disorder prediction 220 315 - -
Apr5g1197 1943 Coils Coil 16 40 - -
Apr5g1197 1943 MobiDBLite consensus disorder prediction 331 386 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1197 1536 1742 U-box Gene Family AT2G33340 23.451 1.39e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1197 K11789 - gmx:100796030 3102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1197 5 16413303 16422620 Apr5g1197 5 16413303 16422620 ECH