Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1181 ATGCCAACGTGTTACAGAATTAAGGTATTGATGGATGAGTATTCTGGTAAAAGAGCCATTGATGGGGTGGTAGTCCCTAGAAAGGGGATGACCCATGTGTTCAGAGAGACTGGTAATACTAGAGATCGAAATGGTCAGGTGTGCAGCCGTGTAACTTGCAGTAGCAGAATCAACTCTTCTAAAAGTAGTTCTTCTGAAAAAGGTAAATCTTTGAAACCTTCAACCCGGTCTTCTTCAAGTGGCAAGGAAGCAATTGGAAGCTCCTCTAGAACTTTTTCCGGGACTAGTAGCCCTGTTATAAAGCCTCGGAAATCATTATCATCTCAGTTCGAGACTGATTCATCTGAAACTGGTAGTGTACAGGATGAACCACAAATTTCAAAACTCGTACCTCCCGTTGAAAAATTTCAAGCAGAAGTCGAAAATACAGAGTCTGGTAATGTGATGCCAATGGAAGTAGGAAGCTCTAGTGCAGTATCCAATACAAGATCTCGGAGGAATTTTAATCCAAAACCTGGATTACGTGGTCAAGAAATTAAAAGCAATGGTCCTGTGACACGTGCTGGTACCAGTAGGTATGGATTAAGGAACCTCAGATGCAACTCTATTTCTGATGTCATCCCTGCAGGTTGTTCATCATCAGATTCAACCCTTAACAGAAGGAAGGATATGATAAAAAGAAGAAATTGTGAAGGGGAAAGTAGTTCCACTGCTAGAGGGAAGAAGATGAGTGGATCTTCAGTAGAAGGACGGAATTCTGGTTCCAGAAATGGCTTATCTATATATGATTCAAGAATATCTAGGAATAATCCTCCCCACAGGGACCGGTCAGACAGTAGTGTGGCGTCAGTTAGAACACGAAGACCAATTAGTGGTCATGCCAGGGGAAGGCTTTCTATCGAAGGAAATGCTAATCATTTACCACCTAATGTCATACCTTCTCTGCCTCATTCTGGTGATCTTAGTGCTCCTGGCATATCACATCATACTTCTGTAGATACCCCTTTAAGTTATCCAAGCTCTTACAGCAGATCAGGTACTGGAAGTGAAGAATTATATGGTGTTATGCCTGCATCTCCTCCAGAGTATGGCATTGCACATTCTCTAGTAAATCGGGATAGCTTCCGGCGACGTTACAACATGGGTGGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTGACACATGAGCAAATTCTTTTACTGGAGTCCAACTTGTTCCTTACTGGACTAAACTTCTATGATCCACATAGAGAAATGCGATTGGACATTGATAACATGTCATATGAGCAACTGCTGGCTCTTGAAGAGAGGATGGGTACTGTGAGCACAGCTGTAACAGAAGAAGCACTATCAGAATGCTTAAAGAAAAGTTTCTATCAATCCAATGCAGCTGAGAGTTGCAATGAGGATAAGGATGATATCAAATGCAGCATTTGCCAGGAAGAATATGTAGTTGCAGATGAAGTGGGGAGTTTGCAATGTGAGCACATGTATCATGTGGTATGCATACAGCAGTGGCTACGGCTAAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACCTTCAAATTCATCCTCATCCCATGAATTACAATGTTAG 1623 0.4227 MPTCYRIKVLMDEYSGKRAIDGVVVPRKGMTHVFRETGNTRDRNGQVCSRVTCSSRINSSKSSSSEKGKSLKPSTRSSSSGKEAIGSSSRTFSGTSSPVIKPRKSLSSQFETDSSETGSVQDEPQISKLVPPVEKFQAEVENTESGNVMPMEVGSSSAVSNTRSRRNFNPKPGLRGQEIKSNGPVTRAGTSRYGLRNLRCNSISDVIPAGCSSSDSTLNRRKDMIKRRNCEGESSSTARGKKMSGSSVEGRNSGSRNGLSIYDSRISRNNPPHRDRSDSSVASVRTRRPISGHARGRLSIEGNANHLPPNVIPSLPHSGDLSAPGISHHTSVDTPLSYPSSYSRSGTGSEELYGVMPASPPEYGIAHSLVNRDSFRRRYNMGGIAEVLLALERIEQDVELTHEQILLLESNLFLTGLNFYDPHREMRLDIDNMSYEQLLALEERMGTVSTAVTEEALSECLKKSFYQSNAAESCNEDKDDIKCSICQEEYVVADEVGSLQCEHMYHVVCIQQWLRLKNWCPICKASVAPSNSSSSHELQC* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1181 540 Coils Coil 391 411 - -
Apr5g1181 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 11 528 IPR045191 GO:0061630
Apr5g1181 540 Pfam Ring finger domain 482 524 IPR001841 -
Apr5g1181 540 SMART ring_2 483 523 IPR001841 -
Apr5g1181 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 530 IPR013083 -
Apr5g1181 540 MobiDBLite consensus disorder prediction 147 168 - -
Apr5g1181 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 11 528 - -
Apr5g1181 540 MobiDBLite consensus disorder prediction 147 188 - -
Apr5g1181 540 MobiDBLite consensus disorder prediction 219 235 - -
Apr5g1181 540 MobiDBLite consensus disorder prediction 324 343 - -
Apr5g1181 540 ProSiteProfiles Zinc finger RING-type profile. 483 524 IPR001841 -
Apr5g1181 540 MobiDBLite consensus disorder prediction 55 128 - -
Apr5g1181 540 MobiDBLite consensus disorder prediction 268 282 - -
Apr5g1181 540 MobiDBLite consensus disorder prediction 55 124 - -
Apr5g1181 540 MobiDBLite consensus disorder prediction 236 267 - -
Apr5g1181 540 MobiDBLite consensus disorder prediction 210 343 - -
Apr5g1181 540 SUPERFAMILY RING/U-box 477 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1181 Apr-Chr5 16259187 16270539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1181 384 524 C3H Transcription Factor Family AT2G15530 43.972 8.84e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1181 - - gmx:100787213 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0102 9 1244979 1250269 Apr5g1181 5 16259187 16270539 PCT