Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1173 ATGACTCGCGTGTATGTTGGTAACCTGGATTCACGAGTTACCGAGAGAGATCTTGAAGATGAGTTCCATGTTTTCGGAGTTATACGGAGCGTATGGGTTGCAAGGAGACCTCCTGGTTATGCTTTTATTGACTTTGATGATCGCAGAGATGCACAAGATGCCATTCGTGAATTAGATGGTAAGAATGGTTGGAGGGTAGAGCTTTCTCACAACTCTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGTCGTGGTCGGTCTGGTGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGAGAGTGTCGCTTGCGTGGTGGTTCTGGAAGACGTCGGAGCCGCAGTCCACCTCGATACCGCAGGAGCCCCAGTTACGGGCGAAGGAGTTACAGTCCGCGTAGGCGGTCCCCTAAGCGCCGCAGTTTGTCACCTCGTGGACGCAGCTATAGCAGGTCACCTCCTTACAGGGGGCGTGAGGAGTTAACATATGCAAATGGAAACGGCATAAGAGATTGA 537 0.5158 MTRVYVGNLDSRVTERDLEDEFHVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGGGGGGGRGRSGGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRYRRSPSYGRRSYSPRRRSPKRRSLSPRGRSYSRSPPYRGREELTYANGNGIRD* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1173 178 MobiDBLite consensus disorder prediction 108 178 - -
Apr5g1173 178 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 174 - -
Apr5g1173 178 Gene3D - 1 95 IPR012677 -
Apr5g1173 178 MobiDBLite consensus disorder prediction 134 152 - -
Apr5g1173 178 Pfam Zinc knuckle 95 110 IPR001878 GO:0003676|GO:0008270
Apr5g1173 178 SUPERFAMILY RNA-binding domain, RBD 2 89 IPR035979 GO:0003676
Apr5g1173 178 SUPERFAMILY Retrovirus zinc finger-like domains 77 114 IPR036875 GO:0003676|GO:0008270
Apr5g1173 178 SMART c2hcfinal6 95 111 IPR001878 GO:0003676|GO:0008270
Apr5g1173 178 Gene3D - 96 152 - -
Apr5g1173 178 MobiDBLite consensus disorder prediction 66 94 - -
Apr5g1173 178 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Apr5g1173 178 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 174 - -
Apr5g1173 178 CDD RRM_SRSF3_like 3 71 - -
Apr5g1173 178 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Apr5g1173 178 ProSiteProfiles Zinc finger CCHC-type profile. 95 110 IPR001878 GO:0003676|GO:0008270
Apr5g1173 178 SMART rrm1_1 3 69 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1173 Apr-Chr5 16193445 16198665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1173 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 39.683 3.75e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1173 K12896 - jre:108988731 223.402