Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1172 ATGGAGCTAAAAAATGCGAAGCTAGTAAGGTTCTCCAATGATGGAAAAGAGAATCTTGTACCTCCTTGGGAAAAGATAGAAGCTCACAAACATCATGAAAAGCCATTCCCTGTGTACAAGATTCAGACAACACTGAATCCGGAAGGAAAGATGAGTAGTTATAAGAACAGAATGAGTATAAGAATTCCCTCTATTGGAAAGTTTAAGGTTTTCCCAGAAAATCATGAGCCATGGAAGAAGAGAATTCTTGATCCTGGCGGTGATATCATTCTGGAGTGGAACCGGGCTTTCTTGTTTTCTTGTATACTAGCACTGTTTGTTGATCCACTGTTTTTCTACATGCCCTCAGTGGCAAATGATGGGAATTCATCATGTATGGCTACTGATTTGAATTTAGGAATTGTTGTGACATGTTTCCGAACATGTGCTGATGTTTTCTATCTGTTGAACATGGCCATAAAGTTTAGGACGGCCTATGTGTCACCAAGTTCAAGGATTTTTGGAAGGGGTGAGCTTGTTATGGATCCTAAGCTGATTGCAAGGAGGTATTTGAGATCAGAGTTCTTCCTAGATCTTGTAGCTACACTACCTCTTCCCCAGGTATCACAAATGGTGATGTTAAATGACATTAATTGTTGTCTTTTCTTTTTGTGACAGATTGTGATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGCTGATCATACCAACAATGCTCTTGTACTTATTGTTCTGCTTCAATATGTTCCCAGATTGTATTTGATTTTCCCATTAAGTTCTCAGATTATTAAAGCCACAGGTGTAGTTACAAAGACAGCATGGGCTGGAGCAGCTTACAATCTTTTACTTTATATGTTAGCTAGTCATGTCTTGGGGGCATCATGGTACTTGTTGTCAATTGAAAGGCATGCTACTTGTTGGAAATCTGAATGCAGAAATGAAAGCCTTCCAATAAAATGTGTTCTTAAGTACTTGGATTGCAGTACTTTAGACAATGATGATCGCATGAAGTGGGTAAATACTACTTCTGTGTTTGGTAGCTGCAACCCAGAAAATAACATCAGTTTCGACTATGGAATTTTTGGAAATGCAGTGGAAAATAATGTTGTCTCCTCTGCCTTTATAGAGAAGTATCTCTATTGTCTGTGGTGGGGCTTGCAGAACTTGAGCTCCTATGGCCAAGGTTTAACCACAAGCACATTCGTTTGGGAAACTGCATTTGCAATACTCATTGCTATTCTGGGTCTGGTTTTGTTTGCCCACTTAATTGGTAACATGCAGACGTACTTGCAATCGATTACTGTGAGGCTTGAAGAGTGGAGGCTGAAGAGACGTGACACTGAAGAGTGGATGAGACATCGACAACTTCCACAAAATCTGAGAGAGCGTGTCAGAAGATTTGTTCAGTATAAGTGGCTTGCAACGCGTGGTGTTGATGAAGAAACCATCCTACGTGCCCTTCCCACAGACCTTCGTAGAGACATCCAACGTCACCTTTGCTTAGACCTTGTTCGACGTGTACCCTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGTGAGCGATTGGTATCATCTTTGAGTACTCACGGAACATACATAGTAAGAGAAGGAGACCCGGTTACAGAAATGCTTTTTATAATAAGAGGGAGACTTGAAAGCTCAACCACAAATGGAGGCAGAACTGGTTTCTTCAACTCCATTACCTTGAGTCCTGGTGATTTCTGTGGAGAAGAGTTGCTTGCTTGGGCACTGCTTCCAAAATCTACTCTCAATTTGCCTTCTTCTACAAGAACAGTTAAAGCCCTTGTGGAAGTTGAAGCCTTTGCACTAAGAGCAGAAGATCTTAAATTTGTGGCCAATCAGTTTAGACGGCTACACAGCAAGAAGTTACAACACACTTTCCGTTTCTACTCTTACCATTGGAGGACATGGGCTGCATGCTTCATTCAGGCTGCATGGCGCAGGTATAAGAAGAGAATGTTGGCAAAGAGTCTTAGTTTGAGGGAATCTCAGTCCTTCAATTATGATGAACAAGTGAGGGATCAAATGGAACATGAGGAAGAAGAGCACAGTGCAGTGGCTTCAAACACTGCACAAGTGAAACAGAACCTTGGTGTCACTTTATTGGCTTCAAGATTTGCTGCTAACACAAGGAGAGGGGTTCAGAAGATCAAGGATGTAGAGATGCCCAAGTTGCAAAAGCCTGAAGAGCCAGACTTTTCAGTAGAGCCTGACGATGATTGA 2256 0.414 MELKNAKLVRFSNDGKENLVPPWEKIEAHKHHEKPFPVYKIQTTLNPEGKMSSYKNRMSIRIPSIGKFKVFPENHEPWKKRILDPGGDIILEWNRAFLFSCILALFVDPLFFYMPSVANDGNSSCMATDLNLGIVVTCFRTCADVFYLLNMAIKFRTAYVSPSSRIFGRGELVMDPKLIARRYLRSEFFLDLVATLPLPQVSQMVMLNDINCCLFFL*QIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNESLPIKCVLKYLDCSTLDNDDRMKWVNTTSVFGSCNPENNISFDYGIFGNAVENNVVSSAFIEKYLYCLWWGLQNLSSYGQGLTTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPQNLRERVRRFVQYKWLATRGVDEETILRALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTHGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLSPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRYKKRMLAKSLSLRESQSFNYDEQVRDQMEHEEEEHSAVASNTAQVKQNLGVTLLASRFAANTRRGVQKIKDVEMPKLQKPEEPDFSVEPDDD* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1172 750 SMART cnmp_10 509 640 IPR000595 -
Apr5g1172 750 Gene3D Jelly Rolls 507 627 IPR014710 -
Apr5g1172 750 Pfam Cyclic nucleotide-binding domain 532 620 IPR000595 -
Apr5g1172 750 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 44 746 - -
Apr5g1172 750 MobiDBLite consensus disorder prediction 727 750 - -
Apr5g1172 750 SUPERFAMILY cAMP-binding domain-like 439 631 IPR018490 -
Apr5g1172 750 Gene3D Helix hairpin bin 437 500 - -
Apr5g1172 750 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 44 746 - -
Apr5g1172 750 MobiDBLite consensus disorder prediction 727 742 - -
Apr5g1172 750 CDD CAP_ED 509 640 IPR000595 -
Apr5g1172 750 SUPERFAMILY Voltage-gated potassium channels 85 431 - -
Apr5g1172 750 Pfam Ion transport protein 93 436 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Apr5g1172 750 Gene3D - 123 435 - -
Apr5g1172 750 ProSiteProfiles cAMP/cGMP binding motif profile. 509 592 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1172 Apr-Chr5 16185870 16190692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1172 33 746 Ion Channels AT2G24610 71.191 0.0 1058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1172 K05391 - gmx:100803334 1321.99