Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1147 ATGGAAAGAGAGCGAACCCGGAAACGGCGTCGTCTTGCGTGGGACGTAGCTCCTCCACCAGTGCCTGAGGCGCAAAGGGCTCTGGTGGTGGCAGGTGATGATGGAATCGAAAGAAAGCATGTTTCACCTCCAAGAAGGGATGACGATCGCGATGGCCATTATGTCTTTATTCTCGGCGAAAATCTCACTCCTAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGTTGGGACCGCCAAACAAGAGAATATGTGGCTATCAAGGTAGTTAGAAGCATACGGAAGTATCGTGATGCAGCAATGCTTGAGGTTGACGTGCTTCAACATCTAGCAAAGAATGATAGAGGAAGCTCACGGTGTGTGCAGATCCGAAATTGGTTTGATTACCGAAATCACATCTGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGCCTAATCCACACTGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGAATATGTAAAGCTTCCTAGCTGTAAGAGGGTTTCCTCAGATGAGACACAGTTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATTTGATAATCAGAACCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGATAATTCTAGGTCTAGGATGGTCATACCCATGTGACTTATGGAGTGTTGGATGTATTCTCATTGAACTTTGCTCGGGTGAAGCCTTGTTTCAGACTCATGAAAACTTGGAGCACCTTGCAATGATGGAGAGAGTTTTGGGACCTCTTCCGGAGCACATGGTTCGAAGGTCCAACAAGGGCGCAGACAAGTATTTCAAGCGTGGATCACGACTAAGATGGCCCGAAGGAGCTGTTTCAAGGGAGAGTATCAATGCAGTGAAGAAGCTTGGTCATCTTAAGGATATTGTATCACGACATGTGGAGTCCTCAAGGTCCTCTTTCACTGACTTGTTAGATGGCTTATTAACATATGATCCGACCAAACGTCTAACAGCTCACCAAGCCCTTGATCACCCCTTCTTTAGGAATCCAACTTAA 1188 0.4487 MERERTRKRRRLAWDVAPPPVPEAQRALVVAGDDGIERKHVSPPRRDDDRDGHYVFILGENLTPRYKILSKMGEGTFGRVLECWDRQTREYVAIKVVRSIRKYRDAAMLEVDVLQHLAKNDRGSSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSCKRVSSDETQFRCLPKSSAIKLIDFGSTAFDNQNHSSIVSTRHYRAPEIILGLGWSYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPEHMVRRSNKGADKYFKRGSRLRWPEGAVSRESINAVKKLGHLKDIVSRHVESSRSSFTDLLDGLLTYDPTKRLTAHQALDHPFFRNPT* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1147 395 ProSiteProfiles Protein kinase domain profile. 66 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1147 395 Pfam Protein kinase domain 66 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1147 395 SUPERFAMILY Protein kinase-like (PK-like) 53 393 IPR011009 -
Apr5g1147 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Apr5g1147 395 PANTHER BNAA07G37640D PROTEIN 40 392 - -
Apr5g1147 395 Gene3D Transferase(Phosphotransferase) domain 1 120 391 - -
Apr5g1147 395 SMART serkin_6 66 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1147 395 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 40 392 - -
Apr5g1147 395 CDD PKc_CLK 53 391 - -
Apr5g1147 395 Gene3D Phosphorylase Kinase; domain 1 53 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1147 Apr-Chr5 16040822 16044753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1147 65 393 Core Cell Cycle Gene Families AT3G48750 27.139 1.92e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Apr5g1147 Pkinase 1.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1147 K08287 - gmx:100782453 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1147 5 16040822 16044753 Apr5g1147 5 16040822 16044753 ECH