Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1139 ATGGGGAAAGGAACGGTAAGCTTTGGGAAGAGGAGGAACAAGACGCACACACTCTGTGTGCGTTGCGGACGCAGAAGCTTACACATTCAGAAGAGTCGCTGCGGTGCTTGTGCTTATCCAGCAAGCCGCATCCGAAAATACAATTGGAGTGTGAAGGCTATCCGAAGAAAAACGACGGGAACTGGTCGAATGAGGTACCTTAGGAATGTCCCCCGCAGGTTCAAGACAAACTTCAGAGAAGGTACTGAAGCAACCCCCAGAAACAAGTCTGTGGCTGCAGCCTCCTAA 288 0.5104 MGKGTVSFGKRRNKTHTLCVRCGRRSLHIQKSRCGACAYPASRIRKYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTNFREGTEATPRNKSVAAAS* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1139 95 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Apr5g1139 95 PANTHER RIBOSOMAL PROTEIN L37 1 95 - -
Apr5g1139 95 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Apr5g1139 95 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Apr5g1139 95 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Apr5g1139 95 PANTHER 60S RIBOSOMAL PROTEIN L37 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1139 Apr-Chr5 15961014 15962519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1139 1 95 Cytoplasmic Ribosomal Protein Gene Family AT1G15250 86.316 1.06e-56 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1139 K02922 - ini:109190982 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1139 5 15961014 15962519 Apr5g1139 5 15961014 15962519 ECH