Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1130 ATGGACAGTGACAGAGCAACTCCTGCTCCATCAGATGGGTTCGCAGACGGTGTTCAGAAAATTAGAGCACTGCATGGGAGGACAACTGGCCCTACAAGGCGCTCTACAAAAGGACAATGGACACCTGAAGAGGATGAGATTTTGCGGAAGGCTGTTCAGCGTTTTAAAGGAAAGAACTGGAAAAAAATAGCCGAGTGTTTCAAGGATAGAACTGATGTGCAATGCCTGCATAGGTGGCAGAAAGTCTTGAATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTATCGAATTGGTGAACAAATATGGGCCTAAAAAGTGGTCTACTATCGCACAACATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTCAATCCTACTATAAACAAGGAAGCATGGACGCAGGAAGAGGAGTTGGCTCTCATACGTGCTCATCAGATTTACGGGAACAGATGGGCAGAATTAGCGAAGCTCTTGCCTGGAAGGACAGACAATGCTATAAAAAACCACTGGAACAGTTCTGTGAAAAAAAAATTGGATTCTTACTTGGCATCCGGCTTGCTTGCTCAGTTACAAAATGTACCGCTTGTTGGAAATCCGAATCAACCTATCGCTTCAACCTCTTCAAGGATGCCGTACAGTGGAGATGATAACGGTCCTAGGGGGAACGAAGGAGAGGAAGTTTCGCAGTGTAGCCAGGAGTCAGCAAATGCTAGTCATTTTCCTTCAGCCGGAGAGATGAGTAGTGTTGTTTTACAAAACACGGACGAATACAGGCTAAACGAAGAATCTAATCTTGGAAAGGATTATAGTCCTGGTCAAGCATCCTGTTCAGAGCCATACTTCGTGTCTCTGGATGAAGTTACAGCATCCCTCTCAGACATAGCTGGCCAAGAAGTTTGCACTTCTCATTTCATTGACCAGAAATACTCACATGAACCAAGCAATTCAACAAACGGGGATTGCCAGCTTGATTTACTTGCCTTAACCAATTATTCCTCGCTGGACTTGGGCCAGGAATCGTCACAGTTGCAAAATGATTGCATAGCTCATGGCGAAAGCCATGAGGTGGTGAATGTTCCGTATCAGACTTTAGTGGGGTTAGGTGTTGTGACATCCATGGGACCTACATCAATGGACTCTGTTAAACAAGATAATATGTTGATAACTGATGATGAATGTTGCAGAATCCTATTTTCAGAAGCAATGAGTGATGAATGTTTTTCTTCTGGAGATTATAATACAGCTATAAACATGGTTGACTTGTCTGGATGCACCTCATTTCTTTGTCGGTCATTATTACCGTCTGTCCAACCAGTAGTTTCTTCTACTGGTGATACGTTGATGCATACTACTGAAGCTAATCGGTTGGTTGGGTCTGAGGATCAGCATTTTGTCTCCAGAGCACATGATAACTTAATTTATGCCAATGAATTATCCACTTCTCCTTGTATAGACAGAATAGACGCTGCAGAAATGCAAGAACCATCAGATGTTGTGAAGGATAATTCAAAATTGGTCCCTGTAAATAGTTTGGGATCTAAATCAGATGCTATGCAAACTTCCTATCCAACAAATGAAACGCCAAATGTGCATACAAAACAAGAGGACATAGGAGGTCTATGTTATGAACCGCCCCGTTTTCCAAGCTTGGATATTCCTTTCTTAAGTTGTGATCTTATTCAATCTGGGGGTGATATGCAACAAGAATTTAGTCCCCTAGGTATCCGCCAGTTAATGATGTCATCGATGAACTGTCTAACTCCTTTTAGATTGTGGGACTCACCTTCTCACGACAATAGTCCAGATGCCTTGTTGAAAAGTGCTGCTAAAACCTTCACGGCTACACCATCCATAATTAAGAAACGACACCGAGACCTTTTATCTCCACTATCAGATAAAAGAATCGACAAGAAACTTGAGATTGACATGACATCAACTTTGATTAAAGACTTTTCCCGATTGGATGTCATGTTTGATGACAATGAGACTCAGGGAGCAGATTTGCTTTCTCCATCTTCAATGCAAAACATGAAAGCCTTCTCTGCTGAGGATGGTAAAGAAAATCATGGACAATCTTTTAGGGTGGAAGTAGAGAAGAACAAATCTGCAATTTTGGATGACAAAAAGTCAGAAAAAGGTTTAGGTGACAGTAATTCCCCGGATAAGATTATGCAGCAACCTCTTGATGTTGATTCTAAGATGAATGGTGTTCGTACAGCTGCTGATGTTGTGCAACAACCTTCTGGAGTTTTGGTTGAACATGATATGAATGACCTATTATTGTATGGGACTGATCAAATTAATTTAAAATCAGAGAGAGTTCTAAGTTCAAGTGCTAGAACTCAAAAAAACCCATGCTCAAGGGTTAACTCTCCTACTATTCGGGTAAAGGAGAATGAAAGACTTTCAATCGCTGTTACTTGTGTACAATCTGTCAGTTCATCAGGCCCAGGGGAGAATTCGGGTGATCATGCTGGAAAGGATGGTGGTTTTGAAACATGTAGCATATTTGGTGGAACACCGTTTAAGAAAAGCCTTGAATCGCCTTCAGCTTGGAAATCTCCTTGGTTCATCAACACATTTTTGTCTAGCCCCAGGATTGATACTGAAATTACAATTGAGGATTTTGGGTACTTATTGAGCCCAGGTGACAAAAGCTATGATGCAATCGGGTTGATGAAACAAATCAGCGAACAAACTGCTGCTCAATATGCCAATATTCATGAGATTCTGGGAAATGAAACTCCTAAGGCATTACTGGTGGATGCATCTGGAAACCACAGGGATGAAGACCAGGAAAATGATGATCCAAATAAGCAGCATGGGAACCATTCCCCATTGTCTCAATTGGCTTCAAATGCTTTGGTGGAGCGACGGATCCTGGATTTTAGCGAATGTGAAACCCCGGGCAAAGGTGATAATAGCAAATCCTCATCTATGAGCTTCTCAAGCCCTTCTTCGTATTTGTTGAAGGGTTGTAGATAG 3021 0.4181 MDSDRATPAPSDGFADGVQKIRALHGRTTGPTRRSTKGQWTPEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPTINKEAWTQEEELALIRAHQIYGNRWAELAKLLPGRTDNAIKNHWNSSVKKKLDSYLASGLLAQLQNVPLVGNPNQPIASTSSRMPYSGDDNGPRGNEGEEVSQCSQESANASHFPSAGEMSSVVLQNTDEYRLNEESNLGKDYSPGQASCSEPYFVSLDEVTASLSDIAGQEVCTSHFIDQKYSHEPSNSTNGDCQLDLLALTNYSSLDLGQESSQLQNDCIAHGESHEVVNVPYQTLVGLGVVTSMGPTSMDSVKQDNMLITDDECCRILFSEAMSDECFSSGDYNTAINMVDLSGCTSFLCRSLLPSVQPVVSSTGDTLMHTTEANRLVGSEDQHFVSRAHDNLIYANELSTSPCIDRIDAAEMQEPSDVVKDNSKLVPVNSLGSKSDAMQTSYPTNETPNVHTKQEDIGGLCYEPPRFPSLDIPFLSCDLIQSGGDMQQEFSPLGIRQLMMSSMNCLTPFRLWDSPSHDNSPDALLKSAAKTFTATPSIIKKRHRDLLSPLSDKRIDKKLEIDMTSTLIKDFSRLDVMFDDNETQGADLLSPSSMQNMKAFSAEDGKENHGQSFRVEVEKNKSAILDDKKSEKGLGDSNSPDKIMQQPLDVDSKMNGVRTAADVVQQPSGVLVEHDMNDLLLYGTDQINLKSERVLSSSARTQKNPCSRVNSPTIRVKENERLSIAVTCVQSVSSSGPGENSGDHAGKDGGFETCSIFGGTPFKKSLESPSAWKSPWFINTFLSSPRIDTEITIEDFGYLLSPGDKSYDAIGLMKQISEQTAAQYANIHEILGNETPKALLVDASGNHRDEDQENDDPNKQHGNHSPLSQLASNALVERRILDFSECETPGKGDNSKSSSMSFSSPSSYLLKGCR* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1130 1006 MobiDBLite consensus disorder prediction 209 225 - -
Apr5g1130 1006 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Apr5g1130 1006 MobiDBLite consensus disorder prediction 236 256 - -
Apr5g1130 1006 MobiDBLite consensus disorder prediction 1 42 - -
Apr5g1130 1006 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Apr5g1130 1006 MobiDBLite consensus disorder prediction 712 728 - -
Apr5g1130 1006 MobiDBLite consensus disorder prediction 712 738 - -
Apr5g1130 1006 Gene3D - 36 88 - -
Apr5g1130 1006 SMART sant 88 137 IPR001005 -
Apr5g1130 1006 SMART sant 140 188 IPR001005 -
Apr5g1130 1006 SMART sant 36 85 IPR001005 -
Apr5g1130 1006 MobiDBLite consensus disorder prediction 209 256 - -
Apr5g1130 1006 CDD SANT 143 183 IPR001005 -
Apr5g1130 1006 MobiDBLite consensus disorder prediction 977 1006 - -
Apr5g1130 1006 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Apr5g1130 1006 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Apr5g1130 1006 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Apr5g1130 1006 MobiDBLite consensus disorder prediction 938 960 - -
Apr5g1130 1006 Gene3D - 89 140 - -
Apr5g1130 1006 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Apr5g1130 1006 Gene3D - 142 202 - -
Apr5g1130 1006 MobiDBLite consensus disorder prediction 938 952 - -
Apr5g1130 1006 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Apr5g1130 1006 CDD SANT 40 83 IPR001005 -
Apr5g1130 1006 PANTHER MYB PROTEIN-RELATED 6 1005 - -
Apr5g1130 1006 MobiDBLite consensus disorder prediction 982 1000 - -
Apr5g1130 1006 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Apr5g1130 1006 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Apr5g1130 1006 MobiDBLite consensus disorder prediction 524 543 - -
Apr5g1130 1006 PANTHER TRANSCRIPTION REPRESSOR MYB5 6 1005 - -
Apr5g1130 1006 CDD SANT 91 135 IPR001005 -
Apr5g1130 1006 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Apr5g1130 1006 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1130 Apr-Chr5 15890316 15897646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1130 5 1006 MYB Transcription Factor Family AT4G32730 43.132 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr5g1130 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1130 - K09420 gmx:100811335 1595.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1130 5 15890316 15897646 Apr5g1130 5 15890316 15897646 ECH
Apr9g0045 9 603136 617768 Apr5g1130 5 15890316 15897646 PCT