Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1122 ATGGAGCAAAGCGAAAGGACGTTGGATTTAGCTCCGCGGAAATTGGCTAGGCAATTGGATTTCACGGCCGTTTGTGGAGCTCCCTCACACCTGAAACTGCAGCCAGCGACGCCTCAGTCACGGTCACAATCAATTCTGCAGCCGCCGTCTCAGCCGCTGCGTTCTCCGTCGCAATTACAATTGGACTTACAGTCATTCGGGCAACGAGCGTGGTTATCTTCACAGCCACATGTACAACAGCAGAGAACACCAGAGACTAAGGTAATGCCGCAATTGCAAGCGCCGCGGCCACAGCTAGTTTCACCGCTTCGTCGAATTCCTCATCCTGTGCAGAAACTTCCGGTGAAGATGATGCAAGTCGTGAAGCAAGAGTCTCCAAGATCACAACCTCGATATAATGTGGAATTCAAGGAGATCACTCCAAAGAAACAAAAACAATGTAACTGCAAAAATTCTAGATGCCTCAAATTGTACTGTGAGTGCTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGTAAATTGTCATAATAATGTGGATAATGAGGTTGCCAGACAGGAGGCAGTTGGAATAACATTGGAACGCAATCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCGCAGGAACCAAGAGATTCCAAGGAAGATGTGTCTGAAATTCAAGTAGTAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCAGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAAAGAAAGGCAATCTTTCATGAAGAGTATAATATAGTTAACATCAAACAGGCAGCAAAAGCATCCAGTAGTGGAATTTTTGGATCATCTGGCTATGGAATCCACATAACACCCAAGAGAAAAATTCAGGAAATATTTTCTGGAAAATCAGCCATGGATCAAACTGTTAACATGACTGCTCAATACCAACAGGAAATTGATCCTATGGCTTCATCACTTTTATCTCTGTCAGCTTCCTTTGTTTCTGACAATGCAAGAATTTCAGGGTCTTCAAGATCTACATACCGGTCTGTAATGGCTGATGTCCTCCAGCTACAGAATGTGAAGAATCTCTGTTCACTCTTTGTTGTTCTCTCAGGAGTAGCTGCAAAGACAAATACAGAAATGAGTGGCAAAGTAGACTGGCAAACAAAAACTGGGAATTTTGAGGCTTCAATGGTTTCATGTGCTCAATCACTGCAAAGCACTAGAGATGTCTACAAGCCTGTTTGTGATAATCATGTGAAAAAAGATGAAGCAGACACAGTTGATATTGCCAATTATAGTAAGCCATTGTCACCAGAAACACTAGCATTGATGTGTGATGAACAGGATGATATGATTTTTGGAAATAGTTCTGTAAATGGAGTTTCATGCAACAGCACTGATCAAAACATGATTCGAAAGTCATCTAATTCTAATGGATGCAGTGATGTTTATGGAGAGCAGGAAAGGCTTGTACTGACCAAGTTCTTGGATGTTCTTCGCAGACTTAGTACTCTTGGTAGTATTAAAGGTCAGGCTATAGTGTTATGA 1602 0.422 MEQSERTLDLAPRKLARQLDFTAVCGAPSHLKLQPATPQSRSQSILQPPSQPLRSPSQLQLDLQSFGQRAWLSSQPHVQQQRTPETKVMPQLQAPRPQLVSPLRRIPHPVQKLPVKMMQVVKQESPRSQPRYNVEFKEITPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNVDNEVARQEAVGITLERNPNAFRPKIASSPQEPRDSKEDVSEIQVVGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERKAIFHEEYNIVNIKQAAKASSSGIFGSSGYGIHITPKRKIQEIFSGKSAMDQTVNMTAQYQQEIDPMASSLLSLSASFVSDNARISGSSRSTYRSVMADVLQLQNVKNLCSLFVVLSGVAAKTNTEMSGKVDWQTKTGNFEASMVSCAQSLQSTRDVYKPVCDNHVKKDEADTVDIANYSKPLSPETLALMCDEQDDMIFGNSSVNGVSCNSTDQNMIRKSSNSNGCSDVYGEQERLVLTKFLDVLRRLSTLGSIKGQAIVL* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1122 533 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 1 528 - -
Apr5g1122 533 PANTHER TESMIN/TSO1-RELATED 1 528 IPR028307 -
Apr5g1122 533 ProSiteProfiles CRC domain profile. 143 267 IPR005172 -
Apr5g1122 533 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 230 264 IPR005172 -
Apr5g1122 533 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 144 179 IPR005172 -
Apr5g1122 533 SMART CXC_2 227 268 IPR033467 -
Apr5g1122 533 SMART CXC_2 142 182 IPR033467 -
Apr5g1122 533 MobiDBLite consensus disorder prediction 33 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1122 Apr-Chr5 15827965 15832461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1122 13 527 CPP Transcription Factor Family AT4G29000 46.197 5.68e-131 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Apr5g1122 TCR 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1122 - K21776 gmx:100811459 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1122 5 15827965 15832461 Apr5g1122 5 15827965 15832461 ECH
Apr5g1122 5 15827965 15832461 Apr7g0415 7 10257205 10262905 ECH