Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1113 ATGGACAGGATCGTTGGGGGCAAGTTTAAGCTTGGTCGGAAAATCGGAAGCGGTTCATTCGGTGAAATTTATATTGCTTCAAATATCGACACATCTGAAATTGTGGCCGTCAAGATGGAAAGCAAGAAGACCAAACATCCGCAACTGTTGTACGAGGCTAAGTTATACAGTATGTTTCAAGGAGCAAGTGGTATTCCAAATATGAAGTGGTGCGGTACTGATGCAGACAATAATGTTCTAGTTATTGATCTTCTGGGACGGAGTCTCGAAGACCTTTTTGTCTATTGTGGGAGGAAGTTTTCACTGAAAACAGTTTTGATGTTGGCCGATCAAATGCTTACGAGAATTGAGTACTTGCATTCCAAGGGATTTCTGCATAGAGATATCAAACCAGATAATTTCCTCATGGGTCTCGGGAGGAAATCAAGTCAGGTTTATATGATTGATTTTGGACTAGCGAAAAGATATAGGGACCCTAACACAAACAAGCATATTCCTTATAGAGACAATAAAAACTTAACAGGGACTGCACGTTATGCAAGTTGCAATACTCACATGGGAATTGAACAAAGCCGTCGCGATGATTTGGAGTCTCTTGGCTATGTTCTTATGTACTTTTTAAGAGGAAGCCTGCCTTGGCAGGGTCTAAAAGCTGTTGACAAAAAGGAAAAATATGACAATATTTGTCAGAAGAAATTATCTACTCCCATTGAGATACTTTGCCAGTCATATCCTGTGGAGTTCGCTTCTTACTTTCATTATTGCCAATCTTTGACATTCGATCAACACCCAGATTATGGATTCTTGAAGCGTATGTTTCATGATTTGTTTACTCGTGAAGGATTTGATTCTGATTATTTATTTGACTGGACCATCCTAAAACATCAGCAGATTCAACAGACACCCAGACTAAATCAATCATCTCCCTCAGCCGCTGTACCTAGCAGTCTAGAACCAGTAGTTATGGAAAAGCATAAAGCTCAAATTACTGTAACTAAACTGTCAGCCAATCCTGGACGACCAAGTGCACGTGTGCACTCTCAGCCATCTAATGTTCAGAATATGAATGCCAAGAATCAGACTGAGAAACATTGTGTGAACAATAGTCCATCTGCATCAGCTGTGCCCAGATCCTCTACAGAAAATGTCTCAAAACTGGACAGGCCGACAGGAACCTCTAACCTGGGTCGTGTATTTGGGAGCAATTCACGTGTTTCAAGCAGCTGGATTCCTTCACTACGCCGAATTTCTTCAGCCAAGTAG 1263 0.4117 MDRIVGGKFKLGRKIGSGSFGEIYIASNIDTSEIVAVKMESKKTKHPQLLYEAKLYSMFQGASGIPNMKWCGTDADNNVLVIDLLGRSLEDLFVYCGRKFSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGRKSSQVYMIDFGLAKRYRDPNTNKHIPYRDNKNLTGTARYASCNTHMGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAVDKKEKYDNICQKKLSTPIEILCQSYPVEFASYFHYCQSLTFDQHPDYGFLKRMFHDLFTREGFDSDYLFDWTILKHQQIQQTPRLNQSSPSAAVPSSLEPVVMEKHKAQITVTKLSANPGRPSARVHSQPSNVQNMNAKNQTEKHCVNNSPSASAVPRSSTENVSKLDRPTGTSNLGRVFGSNSRVSSSWIPSLRRISSAK* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1113 420 Gene3D Transferase(Phosphotransferase) domain 1 1 337 - -
Apr5g1113 420 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Apr5g1113 420 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1113 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Apr5g1113 420 MobiDBLite consensus disorder prediction 358 411 - -
Apr5g1113 420 SMART serkin_6 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1113 420 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 405 - -
Apr5g1113 420 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1113 420 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Apr5g1113 420 PANTHER CASEIN KINASE-RELATED 1 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1113 Apr-Chr5 15727092 15733377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1113 9 218 AGC Kinase Gene Family AT3G08720 27.103 1.05e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Apr5g1113 Pkinase 6.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1113 K08960 - gmx:100792736 739.184