Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1108 ATGAGTAATATCTTCAACCCCTTTAAGAACCGTTTGCTAATGTTGATGATGCTTCTTTCTCTCCCCTTCAACGCTGAAGCTCAAGATAGAGAAGATCAGAACCTGCCACAGTTGCCTCAAACTGTTCATCCAAGCAAGGGGATTGTAATAGCAGTGCTCTCCACAATGTTTGCCATAACACTTCTCTTACTTTTCTACGTCAAGTTCTGTCGAGTTAGCCCTCACCGACTTCTCAACCCAAACCAAGGTCTCCAAAACTTTCACAGTCTCACTCGATCAAGGTCTAGAGTTTCGGGGATAGACAAACAAGTAATCCAGACACTCCCTTTCTTCAATTTTTCTTCCCTTAAGGGATCCAAACAAGGCCTAGAATGCACCGTTTGCCTATCCAAATTCGAAGAAACAGAGATTCTAAGACTGCTTCCAAAGTGCAAACATGCTTTCCACATGGATTGCATTGACAAGTGGCTTGAAAGCCACTCTACATGCCCTCTTTGCAGGCAAAGGGTTGAAGCAGGGGACATCAAAAACCTCAACTTTTCCCTGAGCACAAGTTTCCTACGAGTTCCTTCTAATTTAACTGAGGACCCAAGTCTTGAAATCTTTGTCCAGAGAGAACCATCTCATAGAGGGTTTAACAATGGAAGTGGGTTTTGGGAGAAGAGGGTCATCAACCATAGAATAGTTATCTCTGATGTTGTGGCGAGAAGCAGGTGGAGTGATCTTAATTCTTCGGACATGTTATCGTTGAACTGTGAGATGCTAAATGATATGTGCAGTGCGAGATTCTCTCCTTTAGAATCCACCAACAGTGAAGACTTTCAAGGAACTTTAAGCCTTCTCTCTAGTTCCAATGAGAGAGAGAAGAGGTCCATGTCAGAGATTGCTAAGGTTCCAAGGTTTGCAGAAATCAGAGAGAGTGAAAGTGAAGAGAGGTTGTGGAAAATTTGGTTGCCAATTGCGAGAAGAACAGTGCAGCGGTTTGCAAGACAAGAAGGGAATTCAATTGAATTAGAACATAAACCTTTGCCTTCCAACGTTCGATCTCTGTAA 1053 0.4292 MSNIFNPFKNRLLMLMMLLSLPFNAEAQDREDQNLPQLPQTVHPSKGIVIAVLSTMFAITLLLLFYVKFCRVSPHRLLNPNQGLQNFHSLTRSRSRVSGIDKQVIQTLPFFNFSSLKGSKQGLECTVCLSKFEETEILRLLPKCKHAFHMDCIDKWLESHSTCPLCRQRVEAGDIKNLNFSLSTSFLRVPSNLTEDPSLEIFVQREPSHRGFNNGSGFWEKRVINHRIVISDVVARSRWSDLNSSDMLSLNCEMLNDMCSARFSPLESTNSEDFQGTLSLLSSSNEREKRSMSEIAKVPRFAEIRESESEERLWKIWLPIARRTVQRFARQEGNSIELEHKPLPSNVRSL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1108 350 PANTHER RING-H2 FINGER PROTEIN ATL4J 283 340 - -
Apr5g1108 350 PANTHER RING-H2 FINGER PROTEIN ATL4J 223 272 - -
Apr5g1108 350 PANTHER RING-H2 FINGER PROTEIN ATL4J 19 220 - -
Apr5g1108 350 Pfam Ring finger domain 124 167 IPR001841 -
Apr5g1108 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 175 IPR013083 -
Apr5g1108 350 SMART ring_2 125 166 IPR001841 -
Apr5g1108 350 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Apr5g1108 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 283 340 - -
Apr5g1108 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 223 272 - -
Apr5g1108 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 220 - -
Apr5g1108 350 CDD RING-H2_EL5_like 124 167 - -
Apr5g1108 350 SUPERFAMILY RING/U-box 107 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1108 Apr-Chr5 15705927 15706979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1108 34 332 C3H Transcription Factor Family AT2G20030 39.660 2.60e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1108 K10664 - gmx:100816668 448.358