Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1102 ATGGGCATTTCTTCCCCGCAAAACTCAGAGACAGAGTGTACCTCAAACTCATCTCCACAATCAAAGAAAATAAAACGCATTCGAGACACTAACAAACACCCAGTGTACCGTGGAGTGCGCATGCGAAACTGGGGTAAATGGGTCTCTGAAATTCGTGAACCCAGGAAGAAATCGCGCATATGGTTAGGCACATTTCCGACGCCTGAAATGGCTGCAAGAGCTCATGACGTGGCAGCACTCAGCATCAAAGGTGCCAACGCAATCCTCAACTTCCCCGAGCTGGCTAACTCCCTCCCTCGACCGGCTTCGCTCGCGCCACGCGATGTCCAAGCCGCCGCAACAAAAGCCGCGCACATGGACAGTTTCGACTCGCTCTCTTCAACATTCTCTTCTTCTGATGAGTTGAGCCAGATAATAGAGCTTCCCTCGTTGGAAAGTGATGGGTCTGAAAAGGAGGTTGTCTTGATGGACTCTGTTGATGCGTGGATGTATCAGCCACCGTGGCTAAACACCCCTCAAGAAGAAGAAGAGTTTGGTTTTCAGAGTTTGATTTGGAATAATTATTGA 567 0.4938 MGISSPQNSETECTSNSSPQSKKIKRIRDTNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGANAILNFPELANSLPRPASLAPRDVQAAATKAAHMDSFDSLSSTFSSSDELSQIIELPSLESDGSEKEVVLMDSVDAWMYQPPWLNTPQEEEEFGFQSLIWNNY* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1102 188 Pfam AP2 domain 34 84 IPR001471 GO:0003700|GO:0006355
Apr5g1102 188 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Apr5g1102 188 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Apr5g1102 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 177 - -
Apr5g1102 188 MobiDBLite consensus disorder prediction 1 31 - -
Apr5g1102 188 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Apr5g1102 188 MobiDBLite consensus disorder prediction 1 21 - -
Apr5g1102 188 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Apr5g1102 188 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Apr5g1102 188 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Apr5g1102 188 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 177 - -
Apr5g1102 188 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1102 Apr-Chr5 15665399 15666283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1102 8 180 AP2-EREBP Transcription Factor Family AT5G11590 54.146 1.59e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr5g1102 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1102 K09286 - gmx:100813069 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1102 5 15665399 15666283 Apr5g1102 5 15665399 15666283 ECH