Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1094 ATGGAAGCACACGAGTTTTTCCAGACCACCTTCTGTCCCCAATTCCCCTCCGACAACAACCTCAACGCCTCCTCCGCCGACCACTTCATCGTCGAGGACCTCTTCGACTTCTCCAACGACGACGCTGCTATCACCGACACCACCTTCCACTCCGTTCCCCAAGACGATTCCCCCACCGAAACCCCAGTTGACAGCACCAGCAACTCCAGTTTCCCAGTCACCGACGGGCATTTCTCCGGTGACCTCTCCGTCCCGTACGATGATCTAGCCGAATTGGAATGGCTATCAAAATTTGCAGAGGAATCGTTTTCCAGCGAGGACTTGCAAAAGCTGCAGCTGATATCCGGAATCAAAGTGCCAAACGACGCCGTCTCTCAGCCCCGTGAGCAAAACCCGGTGCTCAACCCGCAAGTGTCGGTTCCGGCAAAGGCCCGCAGCAAGAGGTCTCGTGGGCCCCCATGCAATTGGACCTCTCGACTTGTCGTGCTCTCTCCCACGACCACCACGTCGGAGTCTTCGCACTTCGACGCAGGGAAGAAGCCCGCGCCGAGGAGGAGGGACGCCGCCGACGGAGGAGAGGGGCGCAAGTGCCTGCATTGCGCCACGGATAAGACGCCGCAGTGGCGGACTGGGCCCATGGGCCCAAAGACCCTGTGCAATGCGTGTGGCGTGAGGTATAAGTCGGGAAGGCTGGTGCCCGAGTACAGGCCCGCGGCTAGCCCAACGTTCGTGCTGACGAAGCACTCGAATTCGCACCGCAAGGTGCTGGAGCTCCGGCGCCAGAAGGAAATGATGAGGGCCCAGCAACAGCAGTTACTCCAACTGCAGCATCAACAGAACGTGATGTTTGATGTCTCATCCAACGGTGACGATTACTTGATTCATCAACATGTGGGCCCTGATTTCACGCACTTGATCTAG 921 0.582 MEAHEFFQTTFCPQFPSDNNLNASSADHFIVEDLFDFSNDDAAITDTTFHSVPQDDSPTETPVDSTSNSSFPVTDGHFSGDLSVPYDDLAELEWLSKFAEESFSSEDLQKLQLISGIKVPNDAVSQPREQNPVLNPQVSVPAKARSKRSRGPPCNWTSRLVVLSPTTTTSESSHFDAGKKPAPRRRDAADGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAQQQQLLQLQHQQNVMFDVSSNGDDYLIHQHVGPDFTHLI* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1094 306 ProSitePatterns GATA-type zinc finger domain. 197 222 IPR000679 GO:0006355|GO:0043565
Apr5g1094 306 Coils Coil 258 278 - -
Apr5g1094 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 192 255 - -
Apr5g1094 306 MobiDBLite consensus disorder prediction 48 74 - -
Apr5g1094 306 PIRSF Txn_fac_GATA_plant 1 287 IPR016679 GO:0003677|GO:0005634|GO:0045893
Apr5g1094 306 MobiDBLite consensus disorder prediction 159 175 - -
Apr5g1094 306 Pfam GATA zinc finger 197 230 IPR000679 GO:0006355|GO:0043565
Apr5g1094 306 PANTHER GATA TRANSCRIPTION FACTOR 1 306 - -
Apr5g1094 306 CDD ZnF_GATA 196 243 IPR000679 GO:0006355|GO:0043565
Apr5g1094 306 MobiDBLite consensus disorder prediction 139 195 - -
Apr5g1094 306 MobiDBLite consensus disorder prediction 177 195 - -
Apr5g1094 306 Gene3D - 191 241 IPR013088 GO:0006355|GO:0008270
Apr5g1094 306 SMART GATA_3 191 241 IPR000679 GO:0006355|GO:0043565
Apr5g1094 306 PANTHER GATA TRANSCRIPTION FACTOR 1 306 - -
Apr5g1094 306 ProSiteProfiles GATA-type zinc finger domain profile. 191 227 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1094 Apr-Chr5 15580405 15581725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1094 21 306 C2C2-Gata Transcription Factor Family AT4G32890 50.825 3.80e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr5g1094 GATA 2.7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1094 - - gmx:100775634 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1094 5 15580405 15581725 Apr5g1094 5 15580405 15581725 ECH