Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1086 ATGCCTGAGCTCCGTACCCGACCACGCAGAAACCGCTTTGTAGATAACGTTAACCCGAACTCGATTACCCAACCAGACTCGCCGGCCGCAGCCGGAACTCGTCGGAGGAAGAGAACCGCCGACGAAACTCCGGCCAGGAGGAATCGGAAGCAGAAGAACGCGATCGCCGTCAATGAAATCGGCAACGTCGTGAACAACGACAACGCCGGTGCCGTTCGTGAAAACACGGCCAGGAAGTTGAAGGAAGAGGAAGGAGAGAAGAATAAGAAGAAGCCTCCCGTTAGGATTTTGGAGGAGGAAGCCATGGATGAGTACGATAGTGGTGGCCGTAGCGCAGATAAGGCTCCGGGAGCTGAAGACGAAGGCACCACCGCTCCGCTTCCTGAGAAGGTCCAAGTTGGTGGTTCTCCGTTGTACAGAATAGAGAGAAAACTTGGGAAGGGAGGATTTGGGCAAGTTTATGTTGGTCGGCGTGTAGGGGCTACAAATTCTAGTGAACGGTCTGGTTCTGGGGCAATTGAGGTAGCCTTAAAATTTGAACATAGAAGTAGCAAGGGGTGCAATTATGGACCTCCATATGAGTGGCAGGTTTACAATGCTCTTGGTGGTAGTCATGGTGTTCCACGAGTTCACTTCAAGGGACGGCAAGGTGACTACTATATAATGGTCATGGATATGCTTGGCCCTAGCCTGTGGGATGTTTGGAATAACAACTCACACACGATGTCTACAGAAATGGTGGCCTGTATAGCAATTGAGGCTATCTCCATATTGGAGAAGATGCATTCTAGAGGATATGTGCATGGTGACGTAAAACCTGAGAACTTTTTGCTTGGACCCCCTGGAACTCCTGATGAGAAGAAGTTGTTTCTGGTTGATCTTGGTTTAGCAACTCGATGGCGTGATAGTTCGACTGGCCTTCATGTTGACTATGATCAACGTCCTGATGTATTCAGGGGCACAGTTCGATATGCTAGTGTGCATGCTCACCTGGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACACTTGTCTTCCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCCACTTCTCCAGAAACTCTATGTTGCTTTTGTCCTCAACCTTTCCGGCAGTTTGTTGAATACATAGTAAATTTAAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCATTTTTGATGGAGTTGTGGGTCCAAATCCAGACATCAGGCCAATAAACACTGAGGGCGCTCAGAAGCTTATATGTCAAGTTGGACATAAGAGAGGGCGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTTCGAATGGGAATGCCGGCAACACAATGGATTAGTGTTTACAATGCTCGACGTCCAATGAAGCAAAGGTATCATTATAATGTTGCTGATGTGCGGCTGTCCCAACACATTGAGAAAGGAAATGAAGACGGTTTATTTATTAGCAGTGTGGCTTCTTGTTCAAATCTTTGGGCGCTCATCATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATAAACTCTCTTCCTACTTTCTTCACAAGGAATGGATTATGGAACAGTGGGAGAAGAACTATTACATAAGTGCCATAGCCGGAGCTAGTAATGGATACTCATTGGTCGTAATGTCTAAAGGTACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTGTTATGTCCCGTGGGGCTGGTTTTTCGGACCAGGTTGTGGAACTTGATTTCCTGTATCCCAGTGAAGGTATTCATAGGAGGTGGGACAGTGGTTACCGCATCACCTCAACTGCTGCAACATGGGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAGCTGATGAAACTCAAGAAACACTCCGCACATCTGCTTTTCCTAGTACTCATGTCAAGGAAAAATGGGCAAAGAATCTCTATATTGCATCTATTTGTTATGGGAGAACAGTGTCGTAA 2121 0.4587 MPELRTRPRRNRFVDNVNPNSITQPDSPAAAGTRRRKRTADETPARRNRKQKNAIAVNEIGNVVNNDNAGAVRENTARKLKEEEGEKNKKKPPVRILEEEAMDEYDSGGRSADKAPGAEDEGTTAPLPEKVQVGGSPLYRIERKLGKGGFGQVYVGRRVGATNSSERSGSGAIEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHFKGRQGDYYIMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRQFVEYIVNLKFDEEPNYAKYISIFDGVVGPNPDIRPINTEGAQKLICQVGHKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLSQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYKLSSYFLHKEWIMEQWEKNYYISAIAGASNGYSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDSGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1086 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Apr5g1086 706 SMART serkin_6 139 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1086 706 Gene3D Transferase(Phosphotransferase) domain 1 110 462 - -
Apr5g1086 706 MobiDBLite consensus disorder prediction 13 28 - -
Apr5g1086 706 SUPERFAMILY Protein kinase-like (PK-like) 139 419 IPR011009 -
Apr5g1086 706 Pfam Protein kinase domain 139 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1086 706 ProSitePatterns Protein kinases ATP-binding region signature. 145 178 IPR017441 GO:0005524
Apr5g1086 706 MobiDBLite consensus disorder prediction 74 117 - -
Apr5g1086 706 PANTHER - 85 680 - -
Apr5g1086 706 MobiDBLite consensus disorder prediction 31 53 - -
Apr5g1086 706 PANTHER CASEIN KINASE-RELATED 85 680 - -
Apr5g1086 706 MobiDBLite consensus disorder prediction 1 135 - -
Apr5g1086 706 ProSiteProfiles Protein kinase domain profile. 139 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1086 706 CDD STKc_CK1 139 415 - -
Apr5g1086 706 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1086 Apr-Chr5 15501486 15510302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1086 234 415 MAP Kinase Kinase Kinase AT5G50180 24.457 2.03e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Apr5g1086 Pkinase 1.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1086 - - gmx:100779382 1269.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1086 5 15501486 15510302 Apr5g1086 5 15501486 15510302 ECH
Apr5g1086 5 15501486 15510302 Apr9g0030 9 406920 411693 ECH
Apr5g1086 5 15501486 15510302 Apr9g0030 9 406920 411693 PCT