Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1073 ATGGCGATTGCTACAGAGACTCAACCTCAACCTCCACAACTCAAGGAATCTTCGGAGGTTTCAGGTTCGGCCGTGGAGCAAAGAAGGTGGACCCTGAATGATTTCGATATTGGAAAACCTCTTGGAAGGGGAAAATTCGGCCACGTCTATTTGGCCAGAGAAAAGAGTAGTAATCATATCGTTGCTTTGAAAGTACTCTTTAAGAGCCAATTGCAACAATCCCAAGTTGTGCATCAACTCCGGAGAGAAGTTGAAATACAAAGTCATCTCCGACATCCCCATATCCTGCGCCTTTATGGATACTTTTATGATCAGAAACGAGTTTATTTGATTTTAGAGTATGCGCCCAAAGGTGAACTTTACAAGGAATTGCAGAAATGCAAATATTTCAGTGAAAGGCGTGCAGCCACTTATGTTGCATCATTGGCCCGAGCCCTTATATATTGCCATGGAAAGCATGTAATACACAGGGATATTAAACCAGAGAACCTTCTTATTGGTGCACAGGGTGAACTGAAAATAGCAGACTTTGGATGGTCGGTGCATACGTTCAATCGCCGGAGGACCATGTGTGGCACACTGGATTACCTTCCTCCTGAGATGGTGGAGAGTGTAGAACATGATGCAAGCGTGGATATATGGAGCCTTGGTGTCCTGTGCTATGAGTTTCTATATGGAGTCCCTCCTTTTGAGGCTAAAGAACATTCTGATACTTATAGGAGGATAGTACAAGTCGATCTCAAGTTCCCTCCTAAACCAATTGTGTCATCAGCTGCCAAGGACCTCATCAGTCAGATGCTGGTCAAGGATTCCTCTCAACGTCTACCATTGCACAAAGTCCTTGAACACCCTTGGATTGTCCAGAATGCGGAGCCCTCTGGTGTATATAGGGGCTAG 897 0.4493 MAIATETQPQPPQLKESSEVSGSAVEQRRWTLNDFDIGKPLGRGKFGHVYLAREKSSNHIVALKVLFKSQLQQSQVVHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSSQRLPLHKVLEHPWIVQNAEPSGVYRG* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1073 298 Gene3D Transferase(Phosphotransferase) domain 1 119 294 - -
Apr5g1073 298 MobiDBLite consensus disorder prediction 1 22 - -
Apr5g1073 298 Pfam Protein kinase domain 37 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1073 298 ProSitePatterns Protein kinases ATP-binding region signature. 41 64 IPR017441 GO:0005524
Apr5g1073 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Apr5g1073 298 ProSiteProfiles Protein kinase domain profile. 35 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1073 298 SUPERFAMILY Protein kinase-like (PK-like) 23 290 IPR011009 -
Apr5g1073 298 CDD STKc_Aurora 34 287 - -
Apr5g1073 298 Gene3D Phosphorylase Kinase; domain 1 22 118 - -
Apr5g1073 298 PIRSF ILK 4 284 - -
Apr5g1073 298 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 1 298 - -
Apr5g1073 298 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 1 298 IPR030616 GO:0004672
Apr5g1073 298 SMART serkin_6 35 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1073 Apr-Chr5 15404445 15407277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1073 26 297 CBL-interacting serine-threonine protein kinases AT5G10930 35.125 1.90e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Apr5g1073 Pkinase 2.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1073 K08850 - gmx:100803678 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1073 5 15404445 15407277 Apr5g1073 5 15404445 15407277 ECH