Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1047 ATGTCTCCACCAGTACTGGGCATAGGGGAGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGTTTCCTCAACCACCATGGAAAGTGTGTGCCTCAAGAGCATGGAATTAAAAGAACGCAATTACATGGGATTATCGGATTGTTCTTCTGTGGATAGCTCGGTTCCGTCGTTCTCAGAAGAGAGTAAAAGTAAACTGAACCTGAAAGCCACAGAACTCAGGCTTGGGCTTCCAGGATCACAGTCTCCCGAAAGAGATTCTGATCTTTCCTTAAGAAGCTCAACTCAATTTGATGAAAAGCCTCTGTTTCCTTTGCGTCCTTCGACCGATGATCCCCATTCTACGTTGAAGATTGCTGTTTTGGGAAACAAAAGAGGGTTCTCTGATGCCATGAATGGGTTCCCAGAGGGGAAATTCCATGGTAATTCAGAGGCAAATCAAATACTGTCACCAAGGCCTGCTTCTAACTTGGGATTAAAACCTGGTTCTACTGTTGAGAATGTTGGGACTCAGCAAACCAAAATGAAAGAAGTAGCAACAACGAAGGTGGGGCTTGATAGGCCTCATGCTGTCAATGAAACCAGACCAGGGCTTGATGGTTCTGCAAATAATAATAGCAGTGCACCAGCAACCAAGGCTCAGGTTGTAGGGTGGCCTCCTATAAGATCATTCAGGAAAAATTCATTGGCAAATAATTCAAAGAACACTGAAGAAGTTGATGGAAAAGTGGGGTCCGGTGCACTGTTCGTCAAGGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTATTCTACATATCCAGAATTATCTTCTGCTCTAGCCAAGATGTTCAGCTGTTTTACTATAAGTCAATGTGGATCTCATGGAAATCTGGGCAGGGAGATGCTGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCGGAATATGTTCTTACATATGAGGACAAAGATTGTGATTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTTATTGAAACATGCAGGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTAAAAAGTAA 1077 0.4364 MSPPVLGIGEEEGKSNVTLLVSSTTMESVCLKSMELKERNYMGLSDCSSVDSSVPSFSEESKSKLNLKATELRLGLPGSQSPERDSDLSLRSSTQFDEKPLFPLRPSTDDPHSTLKIAVLGNKRGFSDAMNGFPEGKFHGNSEANQILSPRPASNLGLKPGSTVENVGTQQTKMKEVATTKVGLDRPHAVNETRPGLDGSANNNSSAPATKAQVVGWPPIRSFRKNSLANNSKNTEEVDGKVGSGALFVKVSMDGAPYLRKVDLKNYSTYPELSSALAKMFSCFTISQCGSHGNLGREMLLNETKLKDLLHGSEYVLTYEDKDCDWMLVGDVPWEMFIETCRRLRIMKSSDAIGLAKK* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1047 358 Pfam AUX/IAA family 70 357 IPR033389 -
Apr5g1047 358 MobiDBLite consensus disorder prediction 188 212 - -
Apr5g1047 358 ProSiteProfiles PB1 domain profile. 246 349 IPR000270 GO:0005515
Apr5g1047 358 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 357 IPR003311 GO:0005634|GO:0006355
Apr5g1047 358 MobiDBLite consensus disorder prediction 196 211 - -
Apr5g1047 358 MobiDBLite consensus disorder prediction 73 110 - -
Apr5g1047 358 PANTHER AUXIN-INDUCED PROTEIN 17 357 - -
Apr5g1047 358 SUPERFAMILY CAD & PB1 domains 244 348 - -
Apr5g1047 358 Gene3D - 241 358 - -
Apr5g1047 358 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1047 Apr-Chr5 15081735 15086581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1047 260 349 B3 DNA Binding Superfamily AT1G19220 33.333 6.22e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr5g1047 AUX_IAA 5e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1047 K14484 - gmx:100783314 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1047 5 15081735 15086581 Apr5g1047 5 15081735 15086581 ECH