Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1046 ATGGAGCTGTATGACCAGGATTTCTTGGAGGAATTGATGACTCTAAGAAGAGAAACATGGGACACCAATCCAAACACAGAAGAAAACCCATTCTTCTCTAATAGCTGGAGTTTTGACTCTTTTGATCAAAACTCTCTACCTTATCTCCCAAACTCTTCTTGTGGTCAAGAAGTTCCTCAAGGCTACAATGACTACACCTTCAATGAAATCTATGGTTCCTTACTTGATGAATCTTTTGCACCACAGATTATTGATTCACACTATAATACCCTCGATACTCCACTCAACACCCCTCCATTTCTTGCTCAAGAAGATTATCCATTGTCCATGATGGAAGAAGATGACCCGGGTTTGCTAGGGGAAGAGCTTCAAAATTTGGAGCTGCAAACCACATGCAAAATGGAACCAACCCAATCTCCTGAAATGCCAGTTTTCAACATGGGTACTGGTCTTGAAAGAAAGAATCGATCAAAGAAGCTGCAAGGGCAACCCTCCAAGAATCTAATGGCTGAGAGGAGAAGAAGAAAGAGATTAAACGATCGTCTCTCAATGCTAAGAGCAATTGTCCCAAAGATAAGTAAGATGGACAGAACTTCAATACTTGGAGACACTATTGATTACATGAAAGAACTTCTTGAGAAGATCAACAATCTGCAACAAGAAATAGAGGTAGATTCAAACATGGCAGGGATTTTCCGAGATGCAAAGCCAAATGAAATCTTAGTGAGAAATTCACCCAAGTTTGAGGTGGAGAGGAGTTTGGATACAAGGGTCCAAATTTGCTGTGCAGGGAAACCAGGCTTGTTGCTATCTACAGTGAACACCCTGGAAGCATTAGGCCTTGAGATTCAACAATGTGTCATTAGCTGTTTCAATGATTTTACAATGCAGGCTTCTTGTTCAGAGGAATTGGAGGGAAGGACAATGCTGAGTTCTGAAGATATAAAGCAAGCTCTATTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 993 0.4089 MELYDQDFLEELMTLRRETWDTNPNTEENPFFSNSWSFDSFDQNSLPYLPNSSCGQEVPQGYNDYTFNEIYGSLLDESFAPQIIDSHYNTLDTPLNTPPFLAQEDYPLSMMEEDDPGLLGEELQNLELQTTCKMEPTQSPEMPVFNMGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEIEVDSNMAGIFRDAKPNEILVRNSPKFEVERSLDTRVQICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELEGRTMLSSEDIKQALFRSAGYGGRCL* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1046 330 SMART finulus 168 217 IPR011598 GO:0046983
Apr5g1046 330 MobiDBLite consensus disorder prediction 153 172 - -
Apr5g1046 330 CDD ACT_UUR-ACR-like 256 297 - -
Apr5g1046 330 PANTHER DNA BINDING PROTEIN 3 330 - -
Apr5g1046 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 224 IPR036638 GO:0046983
Apr5g1046 330 Coils Coil 201 228 - -
Apr5g1046 330 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Apr5g1046 330 Gene3D - 152 226 IPR036638 GO:0046983
Apr5g1046 330 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 330 - -
Apr5g1046 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1046 Apr-Chr5 15059322 15060671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1046 153 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 66.484 3.83e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr5g1046 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1046 - - gmx:100812578 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1046 5 15059322 15060671 Apr5g1046 5 15059322 15060671 ECH