Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1043 ATGTCGAACCACAACATCCCAAATCCCTTCTCCAAAGTGAAGTTGATCTGCAGATACGGAGGCAAAATCCTCCCCAAGCCATCCAATAACATGAAACTCGCTTACATTGGCGGAGACATAAAAATCATGAAAGTTGATCGCAACATAAACTTCTTCCATCTCTTGAAAAACATCCACTCCTTCACCAAAAACCACGTCCTTTTAAAATACCAACTCCCCGGCGAGGATCTTGACACTTTAATTTCCGTTGTTAACGACGAGGATCTAGAGAACATGATGGCTGAGTATGATCGAGTGTGTCACGCCTCCACCAAGTTCCGCCACTTCAAGCTGTTCCTATTCCCATGTTATCAAACTCCGAAGTCATCCCAAGGCGATTCCGATTCCGATTCCGATTCCGATTCCGATTCCGATTCTGATTCTGATTCTGATTCTTCTGCCACTGCTTCTATGCTTGATGGTAATGCAGATATTATTACGCAGTTGCAATTGGAATTGGAGGAACGGATCCTGACTAACGAGTTTCAGAGTTTTCTGAAGAATATAAATACAGATGATCACGTAAGAATGGCTTTTCGTCTGGAATGGCTCCTGACTAACGAGTTGCAGAGTTTTCTGAAGAATACAAATGCAAATGATCACGTAAAAATGGCTAATAATCTTCCTCTTCAGAATCACAACATTCCATTGCATGGCCAAGCTTGGACTCCAATGTCATTACCAGTGCCAGAGAGCCACGTGACCGACGGTGATAATGCATGGAGAGCCCAAGCCCAAGCCCATCCTACTTCCGTTGTAACACCTATCTCTACTCCCAAAAGTCACGTGACAAACGATGGATATGCTTTGGGGGGCCAATCACACGCTCATTATGCTCTACCTCCCCACTTGGTCAATGGTGGATATGCATACCAGTCTCAAGAAGCCCAAGCCCATTCTACTTCGGTTGCTCCACCATTGTCTACGCCGAAAAGTTACGTGACAAGCCACTGTTATGAGTTGGGAGCCCACTCACAAGCCCATTCCGCTTTGGCTTCCCACGTGACTGGGAGTGGTTATGCACTTGGGGGTTCTTCACCTGTGTCCGGAGTGTACCAAGAAAGTGCTCCGCAACACATGGCTACACCAGTTGGTGAGGGTAACTGTATAGACCCGGGCATGGCTCTGTTCATACAAATTTACGGTACCACACCCAGTGAAGCTTATTCTCGCCTTTATCCATCTCTAACAGGGCCAGTCCCAAATGATGGCCGGAATTACTGA 1263 0.4632 MSNHNIPNPFSKVKLICRYGGKILPKPSNNMKLAYIGGDIKIMKVDRNINFFHLLKNIHSFTKNHVLLKYQLPGEDLDTLISVVNDEDLENMMAEYDRVCHASTKFRHFKLFLFPCYQTPKSSQGDSDSDSDSDSDSDSDSDSDSSATASMLDGNADIITQLQLELEERILTNEFQSFLKNINTDDHVRMAFRLEWLLTNELQSFLKNTNANDHVKMANNLPLQNHNIPLHGQAWTPMSLPVPESHVTDGDNAWRAQAQAHPTSVVTPISTPKSHVTNDGYALGGQSHAHYALPPHLVNGGYAYQSQEAQAHSTSVAPPLSTPKSYVTSHCYELGAHSQAHSALASHVTGSGYALGGSSPVSGVYQESAPQHMATPVGEGNCIDPGMALFIQIYGTTPSEAYSRLYPSLTGPVPNDGRNY* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1043 420 Pfam PB1 domain 30 113 IPR000270 GO:0005515
Apr5g1043 420 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 6 318 - -
Apr5g1043 420 CDD PB1_UP2 16 114 - -
Apr5g1043 420 MobiDBLite consensus disorder prediction 120 150 - -
Apr5g1043 420 PANTHER OS05G0427100 PROTEIN-RELATED 6 318 - -
Apr5g1043 420 Gene3D - 31 115 - -
Apr5g1043 420 SMART PB1_new 28 116 IPR000270 GO:0005515
Apr5g1043 420 SUPERFAMILY CAD & PB1 domains 32 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1043 Apr-Chr5 15031280 15032542 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1043 12 114 MAP Kinase Kinase Kinase AT5G57610 42.718 1.37e-22 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1043 - - aprc:113866178 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1043 5 15031280 15032542 Apr5g1043 5 15031280 15032542 ECH