Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1042 ATGGTGGTGAGGAAAGTGGGTAAGTATGAGATTGGGAGAACGATTGGGGAGGGAACCTTTGCGAAGGTGAAGTTCGCTCAGAACACAGAAACTGGGGAGAGCGTGGCCATGAAGGTACTTGACCGTAGCACCATAATCAAGCACAAGATGGTCGACCAGATCAAGAGGGAGATTTCGATTATGAAGCTAGTGAGGCATCCTTATGTTGTTCGTCTGCACGAGGTTCTTGCAAGCCGCACGAAGATTTATATCATATTGGAGTTCATTACGGGTGGTGAATTGTTTGATAAAATTATACACCATGGGCGTCTGAGTGAAGCTGAATCTAGAAGATATTTCCAACAGCTTATTGATGGGGTAGATTATTGCCACAGTAAGGGAGTTTATCACAGAGATTTAAAGCCTGAAAATCTTTTACTCGATTCACTAGGAAATATGAAGATTTCAGATTTTGGTTTGAGCGCATTGCCTGAACAGGGGGTGAGTATCCTTCGGACAACATGTGGTACTCCGAACTATGTTGCTCCTGAGGTACTCAGTCACAAGGGTTACAATGGTGCTGTGGCGGATGTTTGGTCCTGTGGGGTTATCCTGTATGTCCTACTGGCTGGATATCTCCCATTTGATGAGCTTGATCTAACAACCTTATACAGTAAGATAAATAAAGCAGAGTTTTCATGTCCTCCTTGGTTTCCCTTGGGAGCAAAAACACTGATACATAGAATTTTGGACCCAAATCCTGATACTCGTATAACCATTGAGCAGATAAGAAATGACGAATGGTTTCAGAGGGGTTACAATCCTGTCAGTCTTCTTGAATATGAAGATGTAAATTTAGATGATGTGAATGCCGTTTTTGATGATGCTGAGGTCTGTTATATCTCTCAGCAATGTGATAACGAGGACACAGGTCCTTTAATGCTTAATGCATTTGACTTGATAATTCTATCTCAAGGCTTAAACCTTGCAACAATATTTGATCGGGGTCAGGACACTGTGAAATACCAAACCCGCTTTATCTCTCAAAAGCCAGCAAAGGTGGTTCTATCAAGTATGGAAGTTGTGGCACAATCAATGGGATTTAAGACACATATTCGCAACTACAAGATGAGGGTAGAGGGCATTTCAGCAAATAAAACATCTTATTTCTCAGTCATCCTGGAAATTTTTGAAGTGGCTCCTACGTTTTATATGGTGGACATTCAGAAAGCAGCTGGAGATACAGGTGAATACCTCAAGTTTTACAAGAACTTTTGTAGCAATCTTGAGGATATAATCTGGAAACCGCCTCATGAATCAAGCAAATCAAGGACCTCCAAGACTAAATGCAAAAGACGATAG 1341 0.4154 MVVRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIIHHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNMKISDFGLSALPEQGVSILRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLLAGYLPFDELDLTTLYSKINKAEFSCPPWFPLGAKTLIHRILDPNPDTRITIEQIRNDEWFQRGYNPVSLLEYEDVNLDDVNAVFDDAEVCYISQQCDNEDTGPLMLNAFDLIILSQGLNLATIFDRGQDTVKYQTRFISQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGISANKTSYFSVILEIFEVAPTFYMVDIQKAAGDTGEYLKFYKNFCSNLEDIIWKPPHESSKSRTSKTKCKRR* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1042 446 PANTHER - 2 443 - -
Apr5g1042 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1042 446 SUPERFAMILY Protein kinase-like (PK-like) 6 282 IPR011009 -
Apr5g1042 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 443 - -
Apr5g1042 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Apr5g1042 446 CDD CIPK_C 309 424 - -
Apr5g1042 446 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1042 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Apr5g1042 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Apr5g1042 446 Gene3D Transferase(Phosphotransferase) domain 1 3 304 - -
Apr5g1042 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1042 446 Pfam NAF domain 305 363 IPR004041 GO:0007165
Apr5g1042 446 Gene3D Kinase associated domain 1, KA1 305 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1042 Apr-Chr5 15023146 15029550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1042 1 388 CBL-interacting serine-threonine protein kinases AT4G24400 83.505 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Apr5g1042 Pkinase 1.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1042 - - gmx:100785444 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1042 5 15023146 15029550 Apr5g1042 5 15023146 15029550 ECH