Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1037 ATGTCTGGCCCAGGGGTACGGTTGCACATCCAAGATCACCATGTGGTGATGGACAATGGCATACTCCAAGTTACGTTATCAAATCCCGATGGGATTGTCACTGGGATACGATTTAATGGTGTTGACAATTTACTTGAAGTTCTCAACAAGGAGTCTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACATGTTTTAAAGTTATAGTTCAAAACGAGGAACAGGTCGAGCTTTCATTCACAAGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTCCCCTTAAATATTGACAAAAGATTCATAATGCTCCGAGGTTCATCAGGCTTCTACTCTTACGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATCTTAGTGAAACGAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGGCAAAGGATTATGCCTTTTCCAGAAGATCGCTTGCCTGGAAGATGCCAAACCTTGGGCTACTCAGAAGCTGTCCTACTAGTCAATCCCAAGGATCCACGATTGAAAGGAGAGGTGGATGACAAGTATCAATATTCATGTGAAAACATACATAATCAAGTTCATGGGTGGATATCTTTCAGTCCACCAGTGGGATTCTGGCAGATAACTCCTAGTGATGAGTTTCGTTCTGGTGGACCTGTCAAACAGAATTTGACCTCACATGTAGGCCCCACAACACTTGCAATGTTTCTTAGCGGTCACTATGCGGGACAAGATTTGGTGCCCAGATTTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTTAATTCTGGATCAACTGGTGACGACCCACTTTGGCTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATGTTTTCCCAGCTTCAGAGGATTTTTTAAAATCAGATCAACGGGGGAATGTAAGTGGCAGATTGCTTGTCTTAGACAGGTACATCTGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGTCTGGCCCCACCCGGGGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACTATTAGAAATATACGAGCAGGCGACTACAACCTTTTTGCTTGGGTACCTGGTTTTGTGGGGGACTACAGATTTAATGATTTAATGAGGATAATTTCAGGTTCTTATATGGAATTGGGTGAACTTGTATATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCTGCTGCAGAATTTTACGTTCCAGATCCCAATCCTCAATATATTAATAAGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTATGGGACCGGTATACAGAATTGTATCCTGATGCAGATTTGGTATACACAGTTGGTGTTAGTGACTATACGAAGGATTGGTTTTTTGCTCAGGCTCCCAGAAAAAGAGAGGATAACACTCATCAAGGAACAACTTGGCAAATCAAGTTCGAAGTCAGTGGTGTGGTTCAGGGAAGTACATACAAACTGAGAGTCGCACTTGCATCTGCAACACTAGCTGAATTGCAGATTCGAGTAAACGATCCCAATTCAAGGCGACCCCTATTTACCAGTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATACATGGACTCTATTGGCTATACCATGTGAATATACCATGTTCTCTTCTTATTGATGGCACGAATACTATATATTTTACGCAACCAAGATGCACCAGTCCCTTTCAGGGGCTCATGTATGATTATATTCGTTTGGAAGGGCCACCTTGTTTCAAAGCAGAAACTTAA 1917 0.4194 MSGPGVRLHIQDHHVVMDNGILQVTLSNPDGIVTGIRFNGVDNLLEVLNKESNRGYWDLVWSAPGSKGIFDVIKGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDLSETRITFKLRKDKFQYMAMADNRQRIMPFPEDRLPGRCQTLGYSEAVLLVNPKDPRLKGEVDDKYQYSCENIHNQVHGWISFSPPVGFWQITPSDEFRSGGPVKQNLTSHVGPTTLAMFLSGHYAGQDLVPRFRGGEPWKKVFGPVYIYLNSGSTGDDPLWLWEDAKIQMMNEVQSWPYVFPASEDFLKSDQRGNVSGRLLVLDRYICTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIRNIRAGDYNLFAWVPGFVGDYRFNDLMRIISGSYMELGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPQYINKLFINHPDRFRQYGLWDRYTELYPDADLVYTVGVSDYTKDWFFAQAPRKREDNTHQGTTWQIKFEVSGVVQGSTYKLRVALASATLAELQIRVNDPNSRRPLFTSGLIGRDNSIARHGIHGLYWLYHVNIPCSLLIDGTNTIYFTQPRCTSPFQGLMYDYIRLEGPPCFKAET* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1037 638 Pfam Polysaccharide lyase family 4, domain II 354 423 IPR029413 -
Apr5g1037 638 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Apr5g1037 638 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 633 - -
Apr5g1037 638 CDD RGL4_M 331 430 IPR029413 -
Apr5g1037 638 Gene3D - 328 412 - -
Apr5g1037 638 SUPERFAMILY Starch-binding domain-like 374 408 IPR013784 GO:0030246
Apr5g1037 638 Gene3D - 438 629 - -
Apr5g1037 638 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 633 - -
Apr5g1037 638 SUPERFAMILY Galactose mutarotase-like 13 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Apr5g1037 638 CDD RGL4_N 6 297 - -
Apr5g1037 638 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Apr5g1037 638 CDD RGL4_C 442 629 - -
Apr5g1037 638 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Apr5g1037 638 Gene3D - 8 307 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1037 Apr-Chr5 14987421 14994987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1037 1 632 Polysaccharide Lyase AT1G09910 70.570 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1037 K18195 - gmx:100814185 1243.41