LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g1037	ATGTCTGGCCCAGGGGTACGGTTGCACATCCAAGATCACCATGTGGTGATGGACAATGGCATACTCCAAGTTACGTTATCAAATCCCGATGGGATTGTCACTGGGATACGATTTAATGGTGTTGACAATTTACTTGAAGTTCTCAACAAGGAGTCTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACATGTTTTAAAGTTATAGTTCAAAACGAGGAACAGGTCGAGCTTTCATTCACAAGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTCCCCTTAAATATTGACAAAAGATTCATAATGCTCCGAGGTTCATCAGGCTTCTACTCTTACGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATCTTAGTGAAACGAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGGCAAAGGATTATGCCTTTTCCAGAAGATCGCTTGCCTGGAAGATGCCAAACCTTGGGCTACTCAGAAGCTGTCCTACTAGTCAATCCCAAGGATCCACGATTGAAAGGAGAGGTGGATGACAAGTATCAATATTCATGTGAAAACATACATAATCAAGTTCATGGGTGGATATCTTTCAGTCCACCAGTGGGATTCTGGCAGATAACTCCTAGTGATGAGTTTCGTTCTGGTGGACCTGTCAAACAGAATTTGACCTCACATGTAGGCCCCACAACACTTGCAATGTTTCTTAGCGGTCACTATGCGGGACAAGATTTGGTGCCCAGATTTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTTAATTCTGGATCAACTGGTGACGACCCACTTTGGCTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATGTTTTCCCAGCTTCAGAGGATTTTTTAAAATCAGATCAACGGGGGAATGTAAGTGGCAGATTGCTTGTCTTAGACAGGTACATCTGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGTCTGGCCCCACCCGGGGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACTATTAGAAATATACGAGCAGGCGACTACAACCTTTTTGCTTGGGTACCTGGTTTTGTGGGGGACTACAGATTTAATGATTTAATGAGGATAATTTCAGGTTCTTATATGGAATTGGGTGAACTTGTATATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCTGCTGCAGAATTTTACGTTCCAGATCCCAATCCTCAATATATTAATAAGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTATGGGACCGGTATACAGAATTGTATCCTGATGCAGATTTGGTATACACAGTTGGTGTTAGTGACTATACGAAGGATTGGTTTTTTGCTCAGGCTCCCAGAAAAAGAGAGGATAACACTCATCAAGGAACAACTTGGCAAATCAAGTTCGAAGTCAGTGGTGTGGTTCAGGGAAGTACATACAAACTGAGAGTCGCACTTGCATCTGCAACACTAGCTGAATTGCAGATTCGAGTAAACGATCCCAATTCAAGGCGACCCCTATTTACCAGTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATACATGGACTCTATTGGCTATACCATGTGAATATACCATGTTCTCTTCTTATTGATGGCACGAATACTATATATTTTACGCAACCAAGATGCACCAGTCCCTTTCAGGGGCTCATGTATGATTATATTCGTTTGGAAGGGCCACCTTGTTTCAAAGCAGAAACTTAA	1917	0.4194	MSGPGVRLHIQDHHVVMDNGILQVTLSNPDGIVTGIRFNGVDNLLEVLNKESNRGYWDLVWSAPGSKGIFDVIKGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDLSETRITFKLRKDKFQYMAMADNRQRIMPFPEDRLPGRCQTLGYSEAVLLVNPKDPRLKGEVDDKYQYSCENIHNQVHGWISFSPPVGFWQITPSDEFRSGGPVKQNLTSHVGPTTLAMFLSGHYAGQDLVPRFRGGEPWKKVFGPVYIYLNSGSTGDDPLWLWEDAKIQMMNEVQSWPYVFPASEDFLKSDQRGNVSGRLLVLDRYICTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIRNIRAGDYNLFAWVPGFVGDYRFNDLMRIISGSYMELGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPQYINKLFINHPDRFRQYGLWDRYTELYPDADLVYTVGVSDYTKDWFFAQAPRKREDNTHQGTTWQIKFEVSGVVQGSTYKLRVALASATLAELQIRVNDPNSRRPLFTSGLIGRDNSIARHGIHGLYWLYHVNIPCSLLIDGTNTIYFTQPRCTSPFQGLMYDYIRLEGPPCFKAET*	639

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g1037	638	Pfam	Polysaccharide lyase family 4, domain II	354	423	IPR029413	-
	Apr5g1037	638	Pfam	Polysaccharide lyase family 4, domain III	440	628	IPR029411	-
	Apr5g1037	638	PANTHER	RHAMNOGALACTURONATE LYASE FAMILY PROTEIN	1	633	-	-
	Apr5g1037	638	CDD	RGL4_M	331	430	IPR029413	-
	Apr5g1037	638	Gene3D	-	328	412	-	-
	Apr5g1037	638	SUPERFAMILY	Starch-binding domain-like	374	408	IPR013784	GO:0030246
	Apr5g1037	638	Gene3D	-	438	629	-	-
	Apr5g1037	638	PANTHER	RHAMNOGALACTURONATE LYASE FAMILY PROTEIN	1	633	-	-
	Apr5g1037	638	SUPERFAMILY	Galactose mutarotase-like	13	296	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Apr5g1037	638	CDD	RGL4_N	6	297	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g1037	Apr-Chr5	14987421	14994987	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr5g1037	1	632	Polysaccharide Lyase	AT1G09910	70.570	0.0	961

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g1037	K18195		-	gmx:100814185	1243.41

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