Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1036 ATGAACTTCACTAATCAATTCCTGTTCTTGATGATGCATTTCATCGTGGTTCTGGTTTGTGGTACTAATCATCCAGGGGTACGATTGGATATCCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAGGTCACCTTATCAAATCCCGAAGGAATTGTCACAGGAATTCAATATAATGGACTCGACAATTTGCTTGAAGTTCTTAACGACGAATCTGATAGAGGAATGGAAGCCACAAATTTTACGGTGATAGTGGAAAATGAAGAACAAGTAGAGGTATCTTTCACGAGAACATGGAATCTCTCTCTTGAGGGGAAGCTTGCGCCACTCAATATTGATAAAAGGTTTATAATGCTTAGTGGTTCTTCGGGGTTCTACACCTATGCCATTTACGAGCATTTGGAAGAATGGCCTGCTTTTGATCTTGACAATACTAGGATTGCGTTTAAGCTTAGGAAAGACAAGTTCCATTACATGGTTATAGCGGACAACAGGCAAAGATTTATGCCTCTGCCGGATGACCGGTCACCGGAAAGAGGGGAAGTTCTCGCATACCCTGAGGCTGTTCGGCTTATCAATCCGGTGGAGCCGGAGTTCAAAGGAGAGGTAGATGACAAGTATGAGTACTCGTGCGAGAGCCGAAACAACCGTGTTCACGGTTGGATTTGCATCGATCCATCCAATTCCATTGGATTCTGGCTCATTACGCCAAGCTATGAGTTCCGATCTGCTGGACCCCTCAAGCAGTATCTTACTTCCCATGTGGGCCCAACCACACTTTCTGTATTTCATAGCACGCATTATTCAGGAATAGATCTGATAATGAAATTTGGACCCAATGAGCCGTGGAAGAAAGTCTATGGGCCCATATTCATATACCTTAATTCTCTGTCTAACGGGTTTAGCCCCGTCAGGCTTTGGGAGGACGCCAAACAACAGATGGTGAATGAAATTGAAACCTGGCCATATGCATTTCCAGCTTCCGAGGACTTTCTCAAATCTGACCAACGAGGTAAAGTTCAAGGTAGATTGCTTGTCAGAGACAGGTACATGAGTGATGCATTCATCCCAGTCAACGGTGCTTCTGTGGGATTAGCATCCACAGGAGAGGTTGGATCTTGGCAAAGAGAATCCAAGGGTTATCAATTTTGGACCACTACTGATGATAAAGGCTATTTCTCAATTATTAACATACGCCCTGGGAACTATAATCTGTACTCCTGGGTCACTGGATACATTGGTGATTATCAATATGAATGCGTGATCAACGTAACTTCAGGTTGTGAAATGAATGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGATCCAAACCCCATGTACATTAACAGACTTTATATCAACCATCCAGATAGGTATAGGCAATATGGTTTGTGGGAAAGGTATGCTGATTTGTATCCAAATAAAGACCTAGTTTACACTGTTGGTGTTAGTGACTACAGAAAAGATTGGTTTTTTGCTCAGGTTAACAGGAAGAAAGACAATAACACTTACCAAGGAACCACATGGCAAATTAACTTCAAGCTTGATTATGTAAATACCAATGGAACCTACAAATTGCGATTGGCTTTAGCATCTGTACATTCTGCTGAATTACAGATTCGGATAAACAATTCAACAGCAGACCCACCTTTATTTTCAAGTGGGTTAATTGGAAAGGAGAATACCATAGCCAGACATGGAATTCATGGGCTCTACTGGCTATTCAGCATAGATGTGCAAGGCACTCTTCTGGCGCAGGGGAACAACACCATTTTTCTAACGCAAGCAAGTAACACAGGTCCTTTTATAGGAATTTTGTATGATTATATTCGTTTAGAACGACCCCCTTATACAAATAGTGAAGATCAAAACTAA 1941 0.4219 MNFTNQFLFLMMHFIVVLVCGTNHPGVRLDIQDKHVIMDNGIVQVTLSNPEGIVTGIQYNGLDNLLEVLNDESDRGMEATNFTVIVENEEQVEVSFTRTWNLSLEGKLAPLNIDKRFIMLSGSSGFYTYAIYEHLEEWPAFDLDNTRIAFKLRKDKFHYMVIADNRQRFMPLPDDRSPERGEVLAYPEAVRLINPVEPEFKGEVDDKYEYSCESRNNRVHGWICIDPSNSIGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGIDLIMKFGPNEPWKKVYGPIFIYLNSLSNGFSPVRLWEDAKQQMVNEIETWPYAFPASEDFLKSDQRGKVQGRLLVRDRYMSDAFIPVNGASVGLASTGEVGSWQRESKGYQFWTTTDDKGYFSIINIRPGNYNLYSWVTGYIGDYQYECVINVTSGCEMNVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINRLYINHPDRYRQYGLWERYADLYPNKDLVYTVGVSDYRKDWFFAQVNRKKDNNTYQGTTWQINFKLDYVNTNGTYKLRLALASVHSAELQIRINNSTADPPLFSSGLIGKENTIARHGIHGLYWLFSIDVQGTLLAQGNNTIFLTQASNTGPFIGILYDYIRLERPPYTNSEDQN* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1036 646 CDD RGL4_N 32 297 - -
Apr5g1036 646 SUPERFAMILY Starch-binding domain-like 336 433 IPR013784 GO:0030246
Apr5g1036 646 CDD RGL4_C 448 635 - -
Apr5g1036 646 Gene3D - 334 433 - -
Apr5g1036 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 77 636 - -
Apr5g1036 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 76 - -
Apr5g1036 646 Pfam Polysaccharide lyase family 4, domain II 360 432 IPR029413 -
Apr5g1036 646 SUPERFAMILY Galactose-binding domain-like 443 635 IPR008979 -
Apr5g1036 646 CDD RGL4_M 337 436 IPR029413 -
Apr5g1036 646 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 76 - -
Apr5g1036 646 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 77 636 - -
Apr5g1036 646 Gene3D - 28 279 IPR014718 GO:0030246
Apr5g1036 646 Gene3D - 444 635 - -
Apr5g1036 646 Pfam Polysaccharide lyase family 4, domain III 446 634 IPR029411 -
Apr5g1036 646 Pfam Rhamnogalacturonate lyase family 22 204 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1036 Apr-Chr5 14973337 14977847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1036 27 637 Polysaccharide Lyase AT1G09890 64.659 0.0 856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1036 K18195 - gmx:100786488 1153.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1036 5 14973337 14977847 Apr5g1036 5 14973337 14977847 ECH