Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1035 ATGGGTGGTGGAGCTTCTTCAAACCTCACATACTTCTTCTTCCTCATCACTATCGTCCTATTTGTTATACAGGCAGAGAGCAGAGAAACGCCACCGCCAAGTCCCAATCTCGAAGATGGCGGCGGCATTGCTCCACCACCCCCGGAAAAACCATCGTCGACGTTCAAACCAGGCATAGCCGTCGTGGTGTGCGTTTTGACCACCATGTTTTCCCTCACATTTCTTCTCCTCCTCTACATCAAACACTGCAACGGCGGGAACATCGACACTGGAAGCAACATCACCGGCGGCAACTCGACTTCGCGACCGGTCCCGCCGTTAACCGGAAGGAAGAACTCCGGCATTGACCGCTCCATAGTGGAGTCCTTACCGGTTTTCCGATTTGGATCGCTGCGAGGTCAAAAGGACGAGCTCGATTGCGCGGTTTGCCTCACAAAGTTCGAAGCAGCAGAGGTTCTCCGGCTGTTGCCGAAGTGCAAGCATGCATTCCACGTGGAATGCGTGGACACGTGGCTGGACGCGCATTCCACTTGTCCTCTCTGCCGTTACCGCGTGGATCCGGAGGACATTCTCCTAGTAGAGGACGCTAGGGTTTTCCGACGGAACAACGAACAGGAACGTTCGTGTTTAGACATCGAAAAAGGGAAGGAAATTGCAGAGTCTCGGCGGAGGCATTCGTCAGTAGGTGAAAGGGAAACGGCAGAGGAACATAGTCGGAGTTGGACGGCGTCGTTTAGGAGGTCGTTGGACAGTGCGACGTCGAGAAAGAAGAACGAGAACGCGGTTACGGTTGCGGTTGGGGTTGGTTGCTTTGTGCGTCCGAGAAAAGACGGGATGTTGTTGACGGAGGAGAGAGAGAGAGATAGGAGAAGTATGGAACGGAGGTTAGAGCACCGGATCATTGTGTCTCCGGGTCCAGTCCCAAAGAGTGGGGTGGATGAACGGTGGAGCGACGTGCAGGCATCTGACCTGTTGTATCTAACGTCGGAGATGATAATGAGTGAGAATGGCCGTACTAAAAATGATGATGAGCTGAGTCAGGAGGACAGTTGGAATGGCAGGGGGATAATAAATTCGAGAAGCGTGTCTGAAATCACGAGATTGAGCAGGTTCAATAGAGAGTGCCAACCACACCAACAACAACTTCAACGGCACGGGGATAGAGAGAGAGAGAGAGAAGAGAGGTTAGTGAAGAGGTGGTTGGCTTGGATTTCTAAGTCACGCACACTACCAGCGGTACGGTAG 1245 0.5285 MGGGASSNLTYFFFLITIVLFVIQAESRETPPPSPNLEDGGGIAPPPPEKPSSTFKPGIAVVVCVLTTMFSLTFLLLLYIKHCNGGNIDTGSNITGGNSTSRPVPPLTGRKNSGIDRSIVESLPVFRFGSLRGQKDELDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDARVFRRNNEQERSCLDIEKGKEIAESRRRHSSVGERETAEEHSRSWTASFRRSLDSATSRKKNENAVTVAVGVGCFVRPRKDGMLLTEERERDRRSMERRLEHRIIVSPGPVPKSGVDERWSDVQASDLLYLTSEMIMSENGRTKNDDELSQEDSWNGRGIINSRSVSEITRLSRFNRECQPHQQQLQRHGDREREREERLVKRWLAWISKSRTLPAVR* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1035 414 CDD RING-H2_EL5_like 139 182 - -
Apr5g1035 414 MobiDBLite consensus disorder prediction 91 111 - -
Apr5g1035 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 407 - -
Apr5g1035 414 Pfam Ring finger domain 139 182 IPR001841 -
Apr5g1035 414 SUPERFAMILY RING/U-box 120 187 - -
Apr5g1035 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 189 IPR013083 -
Apr5g1035 414 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Apr5g1035 414 MobiDBLite consensus disorder prediction 29 51 - -
Apr5g1035 414 SMART ring_2 140 181 IPR001841 -
Apr5g1035 414 PANTHER RING-H2 FINGER PROTEIN ATL43 24 407 - -
Apr5g1035 414 MobiDBLite consensus disorder prediction 91 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1035 Apr-Chr5 14967559 14968845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1035 52 403 C3H Transcription Factor Family AT5G05810 46.524 1.26e-83 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1035 K19041 - gmx:100794083 406.757