Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1020 ATGGGTTACCTCTCCTGCAATGCCCACTCCGCAATTGCAACCTGCGACCCACACTACTGCCACCTCAAAAACAACAAACCCACCCCTCCAAAGACAATAACACACTTCCACTACGCGGATCTCCTCGCCGCCACCAAATCCTTCTCCGCCCAAAACTTCTTAGGCAAAGGGAGCCACGGCACAGTCTACAAAGCCACCCTCCACGGCGGGAAACTGATCGCCGCCGTGAAAACCACCAAACTGGTATGGAAACCCACCCACAACCACAGCAGCACATGCAGCGGGTGCGCCAACTGCACCTCCCCCGCGGACAACGAGATCGAGATCCTCTCCCATGTCCCCAGCCCTCGTCTGGTGAACCTCATCGGCTTCTCGACGCACCCAAACGGCAACAAACTAATCGTGGTTGAATACATGCCAAACGGTTCACTTCACGATCTCTTACACTCCACTTCTCCCCCACCCGGTTGGACCGGTCGAATCCGGTTCGCTTTACAAGTAGCGAAAGCGGTTCACCAATTACACTCTTCTAACCCTCCCGTTATTCACCGCGATATTAAGTCTTCTAACATTTTAATCGACCATGAATGGAACGCTAGGCTCGGTGACTTTGGCCTCGCGTTGAGGGGACACGTGGAGGACGTTCGCGTAAAGTGTACACCACCCGCGGGGACGTTAGGCTACCTCGACCCTTGCTATCTTGCGCCTCAGGATCTCAGCGCCAAGAGCGATGTCTTCAGTTTCGGGATCTTGTTGCTCGAGATTATCAGCGGTAGGAATGCTATCGACGTTAACTACAGTCCTCCCTCCGTCGTCGACTGGGCGCTGCCCTTGATTAAACGCCGTGACTTCGCCGGAATTTGTGACCGCCGGATAGGAACGCCGCCCGATGAGGCGGTGATGCGGCAGCTCGCCGTGCTTGCGGCCACCTGCGTGAGGTCGACGGCGGATAAGCGGCCGTCCATGGCGGAGGTGGTGGAGTGTCTTAAATACGTGAGGAAGAGGATTCGTGCGTCGCCGATATGGAGAAGTCTAAGACGGCGCGTGGCGCGTGTGGAGAGCGCGCAGGCGGGGATGACGTGGGATGTTTGTGAGGATGACTGTGAAAGGAGTGAGGAGGTTTTGAGGAGAGTTAAGGGGGGGAGCAGGAGGAATAGGAAAATATCGAGTGTGTCGGGTGTAGGGTACGAGGGTGAGCCCTCCTCCAATAAGGTTATGAGGTCCAAGTCAATCGGTTCGGGTTGGATTCGAATGGATTCGAAGCAAATGGAGCATGGGTTTGGGAGGAGGAGAGTGAGGCTGAAAAAGTCAAAGTCAATGGGGGTTTTGCATTATGGGAGTGAGAATAGCCATAACAATGTTCCAATTCACTGGGCAATGTCCAAGTTGGTGATTAACGATAAGCTGGAAAAGAAAATGCTCGAAAAACCGTTGGTGAGGTCGCATCACACTGGGAGTTATAGCGAAGGTTGA 1473 0.5431 MGYLSCNAHSAIATCDPHYCHLKNNKPTPPKTITHFHYADLLAATKSFSAQNFLGKGSHGTVYKATLHGGKLIAAVKTTKLVWKPTHNHSSTCSGCANCTSPADNEIEILSHVPSPRLVNLIGFSTHPNGNKLIVVEYMPNGSLHDLLHSTSPPPGWTGRIRFALQVAKAVHQLHSSNPPVIHRDIKSSNILIDHEWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPQDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSVVDWALPLIKRRDFAGICDRRIGTPPDEAVMRQLAVLAATCVRSTADKRPSMAEVVECLKYVRKRIRASPIWRSLRRRVARVESAQAGMTWDVCEDDCERSEEVLRRVKGGSRRNRKISSVSGVGYEGEPSSNKVMRSKSIGSGWIRMDSKQMEHGFGRRRVRLKKSKSMGVLHYGSENSHNNVPIHWAMSKLVINDKLEKKMLEKPLVRSHHTGSYSEG* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1020 490 PANTHER - 1 440 - -
Apr5g1020 490 ProSiteProfiles Protein kinase domain profile. 48 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1020 490 Gene3D Transferase(Phosphotransferase) domain 1 139 343 - -
Apr5g1020 490 SUPERFAMILY Protein kinase-like (PK-like) 30 333 IPR011009 -
Apr5g1020 490 Pfam Protein tyrosine and serine/threonine kinase 51 329 IPR001245 GO:0004672|GO:0006468
Apr5g1020 490 Gene3D Phosphorylase Kinase; domain 1 16 138 - -
Apr5g1020 490 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Apr5g1020 490 SMART serkin_6 48 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr5g1020 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Apr5g1020 490 PANTHER OS01G0750732 PROTEIN 1 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1020 Apr-Chr5 14800084 14801556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1020 36 340 Receptor kinase-like Gene Family AT3G59420 39.032 9.61e-60 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Apr5g1020 PK_Tyr_Ser-Thr 3.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1020 - - gmx:100799382 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1020 5 14800084 14801556 Apr5g1020 5 14800084 14801556 ECH
Apr9g0984 9 18875998 18877788 Apr5g1020 5 14800084 14801556 PCT