Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1019 ATGGAATTTGACGAGCACGAAGACCAAGACCAAGAGGAAGAAGAAGAGGAAGAGGAGGAAATGGAGTTCCCCTTGGCGGCGCCGCCGGGTTACGACTCGCTCGGAAACACGGCGGCCAGGACCAAAATGAACGCTACCGAGGGAGTTCCTGTTGCAGCCTCCGTCAATTCTGGTCGCAAAAGCGTGTCCACCGCCGCCGTCAGATACCGAGAATGTCAGAAGAACCACGCCGTCAGCATCGGCGGCCACGCCGTCGACGGCTGCTGCGAGTTCTTGGCGGCCGGAGAAGAAGGCACGCTGGAGGCCGTAATCTGCGCCGCCTGTAACTGCCACCGGAATTTCCACCGCAAGGAGATCGACGGCGAAATTAACCCTTACCACCAGCAGCCGCGCTCGCAGCCTCAGCCTCAGCCGCTTCACCCTCAGTACCACCACCAATTCTCCCATTACTACCACCGCACGACGCCACCTCCCGCTGCCGGATACCTCCACCACCACCACTTGGTCACGCCACCGGTGTCGCAACACCGCCCCCTGGCTCTGCCTCCTGTGGCGTCTGCCGGGGTTTTCAGCAGAGAAGAGGAAGACATGTCAAACCCCAGCAGCAGCGGCGGCGGCGGCGGCGGAGGTAGCGGCAGTGGAACGAAGAAGAGGTTTCGGACAAAGTTCACGCCGGAGCAGAAGGATAAGATGCTGGCATTTGCGGAGAGTGTAGGGTGGCGAATCCAGAAGCATGATGAAGCTGCTGTGGAGCAATTCTGTGCTGAGACATGTGTCAAGAGACACGTCCTCAAGGTTTGGATGCACAATAACAAACACACCCTTGTCAATAGGATAAGTTGGATTACCAGAGTTAATTGTGTCTCAAGTTTTCAAAAGAAGAAAGGAACAATTTGTAATCTAAAATTTTAA 912 0.5625 MEFDEHEDQDQEEEEEEEEEMEFPLAAPPGYDSLGNTAARTKMNATEGVPVAASVNSGRKSVSTAAVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEINPYHQQPRSQPQPQPLHPQYHHQFSHYYHRTTPPPAAGYLHHHHLVTPPVSQHRPLALPPVASAGVFSREEEDMSNPSSSGGGGGGGSGSGTKKRFRTKFTPEQKDKMLAFAESVGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKHTLVNRISWITRVNCVSSFQKKKGTICNLKF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1019 303 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 276 - -
Apr5g1019 303 MobiDBLite consensus disorder prediction 191 218 - -
Apr5g1019 303 Gene3D - 201 277 - -
Apr5g1019 303 SUPERFAMILY Homeodomain-like 202 274 IPR009057 -
Apr5g1019 303 MobiDBLite consensus disorder prediction 1 37 - -
Apr5g1019 303 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 118 IPR006456 -
Apr5g1019 303 Pfam ZF-HD protein dimerisation region 67 119 IPR006456 -
Apr5g1019 303 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 68 119 IPR006456 -
Apr5g1019 303 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 216 272 IPR006455 -
Apr5g1019 303 MobiDBLite consensus disorder prediction 1 23 - -
Apr5g1019 303 MobiDBLite consensus disorder prediction 195 209 - -
Apr5g1019 303 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1019 Apr-Chr5 14786118 14787164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1019 15 275 ZF-HD Transcription Factor Family AT4G24660 49.237 2.01e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr5g1019 ZF-HD_dimer 4.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1019 - - gmx:100820567 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1019 5 14786118 14787164 Apr5g1019 5 14786118 14787164 ECH
Apr9g0983 9 18854236 18855352 Apr5g1019 5 14786118 14787164 PCT