Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1013 ATGACACGGAAGAAGATCAAAATAAAGAAGATCGATAACAAGGCAGCGAGGCAAGTAACATTCTCTAAGAGGAGGAGAGGGCTGTTCAAGAAAGCTGAAGAACTTTCTGTGCTATGCGATGCTGAGATTGGCCTTATTGTTTTCTCAGCTACTGGGAAGCTCTTTGATTATGGCAGCTCCAGTATGAAGGACATAATTACAAGGTATTATAGGCACTCCCATGTCATCAACACCAGACCTTCACCGGAACCGCAGCTAGTGGATAACAATAACGCCAAATTGAGTAAGGAAATTGCAGATAGAAGCCAAGTACTAAGTCAGATGAAAGGCGACGATCTTCAAGGACTAGACCTAAATAAGTTGCGGCAATTGGAGAAAACACTTGAAAAAGGACTCAACCGCGTGATTGAAATTAAGGAAAAGAGGATTATGAGTGAGATTTCCGACCTTCAGAAAAAGGGAATTGAGTTGGAAGAAAAGAACAAACATTTAAAGCAAAAGATAGAGGCAATGTTGGGTAAAGCAAAAGTTCCTTCCCTGGTAGGCTCAAATATGAAGATGCAAGAAGGTGTCTCATTAGAGACTATGAATGGTATTAGAAGTTGCATAAATGACCTTCCTCTTGAGGATGGTTCTTCGGACACAGCTCTTAAGTTAGGGTTGCCCTTCTTTAACTGA 678 0.4115 MTRKKIKIKKIDNKAARQVTFSKRRRGLFKKAEELSVLCDAEIGLIVFSATGKLFDYGSSSMKDIITRYYRHSHVINTRPSPEPQLVDNNNAKLSKEIADRSQVLSQMKGDDLQGLDLNKLRQLEKTLEKGLNRVIEIKEKRIMSEISDLQKKGIELEEKNKHLKQKIEAMLGKAKVPSLVGSNMKMQEGVSLETMNGIRSCINDLPLEDGSSDTALKLGLPFFN* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1013 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 219 - -
Apr5g1013 225 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr5g1013 225 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr5g1013 225 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 219 - -
Apr5g1013 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr5g1013 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr5g1013 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr5g1013 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr5g1013 225 Coils Coil 147 167 - -
Apr5g1013 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr5g1013 225 CDD MADS_MEF2_like 12 74 IPR033896 GO:0000977|GO:0045944
Apr5g1013 225 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Apr5g1013 225 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Apr5g1013 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr5g1013 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr5g1013 225 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1013 Apr-Chr5 14733372 14740402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1013 1 223 MADS-box Gene Family AT2G22540 50.000 8.68e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr5g1013 K-box 3.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1013 - - gmx:100776749 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1013 5 14733372 14740402 Apr5g1013 5 14733372 14740402 ECH