Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1011 ATGATCTATTCGGGCTCAGTAAGATTGTGTCACGACGTTAGGCTATACAGTAATAATGGAAGCTCTTGTTTTTGTCTTAAGCCTATGACTGGTGATCGAGTATGTTTTGTTGCCATCAATCTTTTGCCACATGGTTTGAAGCGGGATTCTTCAGCACTTCTTTCCAGATTACACTCCCCACATAGGCCTCTACCTTCTAGATGTAATGCTTTGCCGTGCCGGTGTTCTCTAATACCAGCCGGAGGGTGTGAGCTACCACTTGTGAAAGTGGCTACTGTTTCGTTGTCAAGGTCATATAATGCTATATTAGGAAAACCAAGTGTGCTTCAATTGATCCCTGCCATTGGTATTATTGGCTTTGCTGTTTTTGGTCTTGAGCCGCTCCTGCGCCTGAGCAGGAATCTGTTTCTCCAAGAAAGGGCTGACAGAAGTTGTAAGAGAAGTAGTTCATGTTATATTTTTACACCTTATTTTAAACCTTTGCTGCTATGGACTGGGGTAATGCTCATCTGCAGGGATTTAGATCCACTAGTGCTGCCATCAGAAACCAGCCAGGCTGTGAAGCAACGGCTGCTGAGTTTTGCAAGATCTCTGTCAACTGTGCTGACATTTGCTTACTGTTCTTCAAGCTTAATTCGACAAGCACAAAAATTTTTTATGGAGAAAAGTGACTTCAATGATGAAAGAAATATGAGCATTGATTTTACTGGGAAAGCTGGATTTACTGCTATATGGGTTGCTGCTGTGTCATTGTTCATGGAGTTGCTGGGTTTCTCCACACAGAGGTGGTTGACTGCTGGTGGTTTGGGCACAGTATTACTTTCCCTTGCAGGGCGTGAGATATTCACAAACTTCCTTTCAAGTGTAATGATTCATGCAACTCGGCCATTTGTTCTGAATGAGCGGATTCAAACAAAAATTAAAGGAGATGAGGTTTCCGGTAAAGTTGAGCATGTGGGCTGGTGGTCACCAACAATAGTTAGAGGTGCTGATTGTGAAGCAGTTCATATTCCTAATCACAAGTTGAGTGTAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGCATCAAGACTCGCCTTGCTATCAGTCACTTGGATGTTAACAAGATTCATAGTATTATAGCTGATATGCGCAACGTTTTGGCCAAAAATCCTCAAGTAGAACAGAGAAAATTGCACCGAAGGGTTTTTCTGGAGGATATTGATCCAGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTTAAAACTTCACGTTCTGAAGAGTACCTCCGTGTAAAGGAGGCAATCCTATTGGATCTTCTCAGAGTTATCAGCCATCATCGAGCTCGGCTAGCCACACCCATTCGCACAGTTCAGAAGATGTGCAGTGATACTGATTTAGATATTGATACATTTGATGACACCATTCCCACTCATTCCAGATCAAAGAAAAACCGTTCTTTCCCACTGATAGAACCACATTATAAAGTTAAGCCTTCAACTCATTCAACTATTACAAGTGAGGGCAAAGATGCCAAGATTAATGAAACCTTGGCATCTGACTTCAGAGTTGAATGTCACAAATTTACAGAGACATCAAACCCCACATCAATATCTCATGCTGAAACCCATAATATGGATCTTGACATTTCAGTCCAAAAGACCTCCAAGTCCGTCCAGCCCAAAAAGGGAAGAGCAGGAAACACAGGAAAGGGAACAACATCCAAAAATTTAACATCCAATGAGTCACAAGATGAAGAGAAGTTTATGGTGTCATCATCATCGGTTAGTCCTTCCTTGGAAGAGAATATTGTTCTTGATGCTGCTCTGCGGGGATCAAAGCGATCTCTTAGAATTGATGAAGAAATGATTCAATCTATCCCTAAAGAATCCCAAGAATTTGCAGTCCAACAGAATGGGCGTGGCCCTCCCATTAGCAAGGATAAGAAGAATGGTGAGCAGAGTAGATGTTGA 1965 0.4168 MIYSGSVRLCHDVRLYSNNGSSCFCLKPMTGDRVCFVAINLLPHGLKRDSSALLSRLHSPHRPLPSRCNALPCRCSLIPAGGCELPLVKVATVSLSRSYNAILGKPSVLQLIPAIGIIGFAVFGLEPLLRLSRNLFLQERADRSCKRSSSCYIFTPYFKPLLLWTGVMLICRDLDPLVLPSETSQAVKQRLLSFARSLSTVLTFAYCSSSLIRQAQKFFMEKSDFNDERNMSIDFTGKAGFTAIWVAAVSLFMELLGFSTQRWLTAGGLGTVLLSLAGREIFTNFLSSVMIHATRPFVLNERIQTKIKGDEVSGKVEHVGWWSPTIVRGADCEAVHIPNHKLSVNVVRNLSKKSHWRIKTRLAISHLDVNKIHSIIADMRNVLAKNPQVEQRKLHRRVFLEDIDPENQALMILISCFVKTSRSEEYLRVKEAILLDLLRVISHHRARLATPIRTVQKMCSDTDLDIDTFDDTIPTHSRSKKNRSFPLIEPHYKVKPSTHSTITSEGKDAKINETLASDFRVECHKFTETSNPTSISHAETHNMDLDISVQKTSKSVQPKKGRAGNTGKGTTSKNLTSNESQDEEKFMVSSSSVSPSLEENIVLDAALRGSKRSLRIDEEMIQSIPKESQEFAVQQNGRGPPISKDKKNGEQSRC* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1011 654 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 555 IPR045042 -
Apr5g1011 654 Pfam Mechanosensitive ion channel 243 445 IPR006685 GO:0016020|GO:0055085
Apr5g1011 654 MobiDBLite consensus disorder prediction 625 654 - -
Apr5g1011 654 SUPERFAMILY Sm-like ribonucleoproteins 281 351 IPR010920 -
Apr5g1011 654 Gene3D - 195 295 - -
Apr5g1011 654 MobiDBLite consensus disorder prediction 548 591 - -
Apr5g1011 654 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 1 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1011 Apr-Chr5 14710131 14716475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1011 1 619 Mechanosensitive Ion Channel Family AT1G58200 51.891 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1011 K22047 - gmx:100797302 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1011 5 14710131 14716475 Apr5g1011 5 14710131 14716475 ECH